Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F19
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    27   0.97 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   2.2  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   3.9  
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    25   3.9  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   3.9  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   5.2  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   5.2  
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    25   6.8  
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    24   9.0  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    24   9.0  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    24   9.0  

>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = -1

Query: 383 NSFEFHRDRLVLLSSGRLVFLRISALGLLGFPVTLARSCCNIADC 249
           N    H  RL    +      RI+A   L  P      CC++ DC
Sbjct: 709 NDLPMHMQRLFFCLANPTAEQRITAQEALNLPFVQEIECCSVDDC 753


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 217 YKWNMLGICKRVENCRTADKDNEHPTCCLVTHP*SRTR 104
           YK N   I KRV+N     +  +H  C LV    ++TR
Sbjct: 52  YKKNSSAIPKRVDNILLRSQKPKHIECLLVDSKITKTR 89


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +2

Query: 128 NKAAGWVFVVLISSSTVLHTFAYPQH---VPLISQAPSSVRTHNSPQYYSNSLPASQESQ 298
           +K  GW+   + ++      F   Q+   V  +S+    VRT  SP    ++   +Q++ 
Sbjct: 133 DKHTGWILKPVFAARLNAKPFFKEQYDLLVVKLSKLYDFVRTRGSPIKGDSAAGGTQQNF 192

Query: 299 VAQERKFAEKPNALKKVAL 355
           V Q  K+   PN + ++ +
Sbjct: 193 VRQTTKYWVHPNNVTELKI 211


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +2

Query: 266 SNSLPASQESQVAQERKFAEKPNALK-KVALDDLDEIQTNSI 388
           SNS  ASQ S+ A ++K  EK ++ K K+A    D++ T+++
Sbjct: 238 SNST-ASQASENASDKKTKEKKSSGKQKIASKKKDQLTTDNV 278


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +2

Query: 209 PLISQAPSSVRTHNSPQYYSNSLPASQESQVAQERKFAEKPNALKKVALDDLDEIQTNSI 388
           P+  + P S+    S   Y++S   S  +  + E K  +         LD+ D+   NS+
Sbjct: 257 PIPGRRPLSI----SSDLYNDSNSGSHSNDDSDETKLKQSSTESSSELLDEKDKFDKNSL 312

Query: 389 SD 394
           +D
Sbjct: 313 ND 314


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 320 AEKPNALKKVALDDLDEIQTNSISDGGFS 406
           AEK  AL + AL+ +   + N +SDG FS
Sbjct: 635 AEKNAALCEAALEKVPLAKHNKLSDGTFS 663


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 206 VPLISQAPSSVRTHNSPQYYSNSLPASQESQ 298
           VP+  Q PSS  ++++  ++  S P S  S+
Sbjct: 401 VPISGQQPSSPASNSNANFFFGSSPQSMSSE 431


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 290 ESQVAQERKFAEKPNALKKVAL--DDLDEIQTNSISDGGF 403
           E ++ +E +   +  A K++ L  + LDE++   + DGGF
Sbjct: 53  EDEIDEENEDTYETAAEKRLRLAREYLDEVKNELVEDGGF 92


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 373 NFIEIV*CYFLQGVWFFCEFPLLGYLAFL*RW 278
           N I +   Y  +GV  F EF L    AFL +W
Sbjct: 431 NIIRMWDTYMAEGVQGFSEFHLYVCAAFLVKW 462


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 167 SSTVLHTFAYPQHVPLISQAPSSVRTHNSPQYYSN 271
           +ST  +    P + P  S  PSS R   SP  YSN
Sbjct: 295 ASTNYNASRPPSNHPHSSNYPSSSRRKPSPDRYSN 329


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 150 SLSLSAVRQFSTRLHIPNMFHLYHRHPAVSERITVRNITATPCQR 284
           S   S  R  S++L+ P+    YH H ++ E ++V +  A+P  R
Sbjct: 40  SADSSRRRSTSSQLNQPSN---YHMHSSLHEEVSVGSSIASPSSR 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,087
Number of Sequences: 5004
Number of extensions: 38099
Number of successful extensions: 114
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)