Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F19
(440 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0629 + 26248960-26249236,26249766-26249894,26250291-262508... 29 1.7
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449... 29 2.2
02_05_0322 - 27926619-27927686 29 2.2
08_02_1052 - 23962374-23963369 28 2.9
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 28 2.9
11_01_0784 - 6557776-6557802,6557909-6557969,6558270-6558336,656... 27 5.1
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 27 8.8
06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070... 27 8.8
>03_05_0629 +
26248960-26249236,26249766-26249894,26250291-26250847,
26250933-26251250
Length = 426
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 334 VWFFCEFPL-LGYLAFL*RWQGVAVIL 257
VWFFC PL L + +W+G+A IL
Sbjct: 329 VWFFCLLPLILPWTTMKLKWKGLACIL 355
>12_02_0858 +
23740589-23743233,23743362-23743503,23744778-23744990,
23745083-23745190,23745378-23745587,23745881-23746055,
23746197-23746264
Length = 1186
Score = 28.7 bits (61), Expect = 2.2
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +2
Query: 173 TVLHTFAYPQHVPLISQAPSSVRTHNSPQYYSNSLP-ASQESQVAQERKFAEKPNALKKV 349
TVL + P + S P +RTH Y ++ LP A++ S +P +++
Sbjct: 628 TVLSSIYQPDGYNINSTLPLRMRTHAREAYATSVLPQATRRSHQVNFDSAERRPQYVQQR 687
Query: 350 ALDDLDEIQTNSIS 391
LD D I +N +S
Sbjct: 688 GLD--DTINSNMLS 699
>02_05_0322 - 27926619-27927686
Length = 355
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 395 RQRWNSFEFHRDRLVLLSSGRLVFLRISALGLLGFPVTLARSCCN 261
R WN ++FH +L+ S +V L + A G+ + R+C N
Sbjct: 235 RLAWNRYDFHYMATLLMDSSAVVVLDMRAPGVPVAELHRHRACAN 279
>08_02_1052 - 23962374-23963369
Length = 331
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +2
Query: 131 KAAGWVFVVLISSSTVLHTFAYPQHVPLISQAPSSVRTHN 250
+ GWV ++L++ + A P+ + L++QAP ++ H+
Sbjct: 7 RLVGWVLLLLLAVAIAGAAAATPRQLFLVTQAPVTLTNHH 46
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 28.3 bits (60), Expect = 2.9
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +2
Query: 155 VLISSST---VLHTFAYPQHVPLISQAPSSVRTHNSPQYYSNSLPASQESQVAQERKFAE 325
++IS ST + + P H L + +T NSP+ Y+ S+P + + AQ +
Sbjct: 376 IMISGSTLEKIQGSATVPVHNELSGKMGIGGQTVNSPKEYAKSVPVVKINSPAQHKHIVG 435
Query: 326 KPN-ALKKVALDD 361
N LK++ DD
Sbjct: 436 DLNFLLKELEKDD 448
>11_01_0784 -
6557776-6557802,6557909-6557969,6558270-6558336,
6560630-6563309
Length = 944
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 146 VFVVLISSSTVLHTFAYPQHVPLISQAPSSVRTHNSPQYYSNSLPASQE 292
V++ ISS+ + FA ++PL+S S R N P + P+S E
Sbjct: 704 VWIDNISSADCDNIFATLSNMPLLSSLLLSARNENEPLSFEALKPSSTE 752
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 290 ESQVAQERKFAEKPNALKKVALDDLDEIQ 376
E + +ER+ E P A+++ +DD+ EI+
Sbjct: 719 EKDIERERRSKENPEAMEEDEVDDIAEIK 747
>06_03_0763 -
24405525-24405701,24406209-24406368,24406924-24407005,
24407098-24407167,24407443-24407607,24407731-24407874,
24408467-24408715,24409006-24409221,24409306-24409398
Length = 451
Score = 26.6 bits (56), Expect = 8.8
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = +2
Query: 83 QCFSDIDSGTRLRMCNKAAGWVFVVLISSSTVLHTFAYPQHVPLISQAPSSVRTHNSPQY 262
+CF + T L M N A ++ V S+ + T + +PL +A ++ +N P+
Sbjct: 367 KCFPQL---TVLSMANLVAETIWHVHRDGSSSIST-SETHSLPLTKEASDALPGYNQPRG 422
Query: 263 YSNSLPASQESQVA 304
+ LP ++E+ A
Sbjct: 423 HMTLLPTTKEASDA 436
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,335,626
Number of Sequences: 37544
Number of extensions: 246799
Number of successful extensions: 662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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