Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F19
(440 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6460| Best HMM Match : SRCR (HMM E-Value=2e-08) 30 0.97
SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092) 29 2.2
SB_43735| Best HMM Match : PHD (HMM E-Value=5.6e-06) 28 3.0
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.0
SB_51587| Best HMM Match : F5_F8_type_C (HMM E-Value=2.6e-37) 28 3.9
SB_19645| Best HMM Match : Smr (HMM E-Value=8.2) 28 3.9
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18) 27 5.2
SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18) 27 5.2
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_58725| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_27993| Best HMM Match : zf-C5HC2 (HMM E-Value=1.5) 27 9.1
SB_22761| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_36778| Best HMM Match : Collagen (HMM E-Value=0.96) 27 9.1
>SB_6460| Best HMM Match : SRCR (HMM E-Value=2e-08)
Length = 234
Score = 29.9 bits (64), Expect = 0.97
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = +2
Query: 146 VFVVLISSSTVLHTFAYPQHVPLIS---QAPSSVRTHNSPQYYSNSLPASQESQVAQERK 316
V+ ++ S +L + P+ P IS Q P S + SPQ S S S+ SQ+++ +
Sbjct: 95 VWGTILRSPQILRSPQIPES-PQISRSPQIPESPKISRSPQI-SESPQISESSQISESSQ 152
Query: 317 FAEKPNALKKVALDDLDEIQTNS 385
+E P + + + +I +S
Sbjct: 153 ISESPQISESPQISESPQISRSS 175
>SB_43866| Best HMM Match : Gelsolin (HMM E-Value=0.092)
Length = 341
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 293 SQVAQERKFAEKPNALKKVALDDLDEIQTNSISDG 397
+++ QE+K E+ NA+++ L D+DE Q + G
Sbjct: 213 AEIEQEKKDDEEDNAMEEAILGDVDEGQNEKSAPG 247
>SB_43735| Best HMM Match : PHD (HMM E-Value=5.6e-06)
Length = 772
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 89 NTVHTVYHEVSCIFFTCESACC 24
NT H YH+V C F ++A C
Sbjct: 640 NTNHQYYHQVQCQLFVTDTAYC 661
>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2437
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 182 HTFAYPQHVPLISQAPSSVRTHNSPQYYSNSLPAS 286
+ FA P SQ+PS+V + SP+ SN PAS
Sbjct: 1094 NAFATTTMSPTSSQSPSAVTSPTSPRSPSNPSPAS 1128
>SB_51587| Best HMM Match : F5_F8_type_C (HMM E-Value=2.6e-37)
Length = 404
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 274 GVAVILRTVMRSDTAGCL*YKWNMLGICKRVENCRTADKDNEH 146
G +LRTV+ +D C+ ++ CK V +T+++D+ H
Sbjct: 48 GAQGVLRTVLVADRLACVLECFHYGETCKTVNYKKTSNEDSSH 90
>SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)
Length = 346
Score = 27.9 bits (59), Expect = 3.9
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = -3
Query: 249 LCVLTLLGACDISGTCWGYANVWRTVELLIR---TTNTQPAALLHILNLVPES 100
+C+L LL C+G + V+LL++ +T P LLHI++L+P +
Sbjct: 113 MCILALLD-------CFGESQWQEQVQLLVKHLEQLSTHPTNLLHIVHLLPHT 158
>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
Length = 1284
Score = 27.5 bits (58), Expect = 5.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 77 CVQCFSDIDSGTRLRMCNKAAGWV 148
C +C+SD D +++ CN WV
Sbjct: 934 CEKCYSDNDFDSKMMHCNDCQHWV 957
>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 27.5 bits (58), Expect = 5.2
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -1
Query: 146 PNLLPCYTSLISYQNRYH*NTVHTVYHEVSCIFFTCES 33
P +P + Q++YH T H+ YH C T S
Sbjct: 1126 PVTVPSHKMPSHNQSQYHHTTSHSAYHHTKCHHTTSHS 1163
>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
Length = 458
Score = 27.5 bits (58), Expect = 5.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 77 CVQCFSDIDSGTRLRMCNKAAGWV 148
C +C+SD D +++ CN WV
Sbjct: 275 CEKCYSDNDFDSKMMHCNDCQHWV 298
>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 27.1 bits (57), Expect = 6.9
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = +2
Query: 113 RLRMCNKAAGWVFVVLISSSTVL--HTFAYPQHVPLISQAPSSVRTHNSPQYYSNSLPAS 286
RL + W IS S L HT A + + + S+R SPQ S + PAS
Sbjct: 725 RLYFARNSIFWQNHTSISKSYPLRNHTLAILIDIRICFRPSHSIRDQRSPQTTSRTFPAS 784
Query: 287 QESQV 301
V
Sbjct: 785 DNRSV 789
>SB_58725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 195 IPNMFHLYHRHPAVSERITVRNITATPCQRHRK 293
+P H + + SE V++I + PCQ HRK
Sbjct: 18 MPCQAHRKYAMSSTSELCHVKHIGSMPCQAHRK 50
>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1271
Score = 27.1 bits (57), Expect = 6.9
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 218 SQAPSSVRTHNSPQYYSNSLPASQESQVAQERKFAEKPNALKKVALDDLDEIQTNSISD 394
+QA + +T + PQ + ++ P + SQVA + A K NAL + D+ + D
Sbjct: 458 AQANTLPQTADKPQAHQSN-PVPEVSQVAPKASLAPKANALPQTKPTPQDQDASGDSDD 515
>SB_27993| Best HMM Match : zf-C5HC2 (HMM E-Value=1.5)
Length = 298
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -2
Query: 208 NMLGICKRVENCRTADKDNEHPTCCLV 128
N G+C+ NC + E P CLV
Sbjct: 110 NQCGLCQNCANCSNNNVPMEQPGACLV 136
>SB_22761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -3
Query: 162 IRTTNTQPAALLHILNLVPESISLKHCTHC 73
I T P A H+L +SI L HC C
Sbjct: 12 ILTRERNPKASAHVLRSRYQSIELTHCHRC 41
>SB_36778| Best HMM Match : Collagen (HMM E-Value=0.96)
Length = 327
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 173 TVLHTFAYPQHVPLISQAPSSVRTHNSPQYYSNSLP 280
T +H F +P+I H SP+Y + S+P
Sbjct: 179 TEVHDFRAFNSIPVIRANKEQPMQHQSPEYLAGSMP 214
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,677,607
Number of Sequences: 59808
Number of extensions: 304100
Number of successful extensions: 854
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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