Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F19
         (440 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29443-10|CAA82578.2|  315|Caenorhabditis elegans Hypothetical p...    32   0.16 
AB121091-1|BAD14918.1|  315|Caenorhabditis elegans T-box transcr...    32   0.16 
Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    29   2.0  
U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical p...    27   6.0  
AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical ...    27   6.0  

>Z29443-10|CAA82578.2|  315|Caenorhabditis elegans Hypothetical
           protein T07C4.2 protein.
          Length = 315

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -1

Query: 422 RAYLTTRNPRQR-WNSFEFHRDRLVLLSSGRLVFLRI 315
           + Y+T R  + + WN F +H++ +++  SGR +F ++
Sbjct: 4   QVYVTLREDQDKLWNLFHYHKNEMIVTKSGRKMFPKL 40


>AB121091-1|BAD14918.1|  315|Caenorhabditis elegans T-box
           transcription factor TBX-8 protein.
          Length = 315

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -1

Query: 422 RAYLTTRNPRQR-WNSFEFHRDRLVLLSSGRLVFLRI 315
           + Y+T R  + + WN F +H++ +++  SGR +F ++
Sbjct: 4   QVYVTLREDQDKLWNLFHYHKNEMIVTKSGRKMFPKL 40


>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 200 QHVPLISQAPSSVRTHNSPQYYSNSLPASQESQVAQERKFAEKPNALKKVALDDLDEIQ 376
           Q VP+I QAP +       Q  +++ PA Q   + Q+ + A+K  A    A   +  +Q
Sbjct: 18  QQVPVIQQAPPNSPAQQQQQAQAHAPPA-QAKPIVQQTQPAQKQQAQAPPAAQQIPVVQ 75


>U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical
           protein C45G9.11 protein.
          Length = 354

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 128 YTSLISYQNRYH*NTVHTVYHEVSCIFFTCESACCLSEGLPR 3
           Y  ++ ++NR   N V  ++ +V       E  CCLS  L R
Sbjct: 157 YQKVVLFRNRMKANKVAPIHTKVQSRHLELEPLCCLSSCLVR 198


>AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical
           protein F43C11.8 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 151 RCPYQQFDSSPHVCISPTCST 213
           +C   Q++ +  VCI PTCS+
Sbjct: 105 KCASHQYNFAEFVCIEPTCSS 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,589,704
Number of Sequences: 27780
Number of extensions: 217043
Number of successful extensions: 754
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)