Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F19
         (440 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.9  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 168 VRQFSTRLHIPNMFHLYHRHPAVSERITVRNITATPCQRHRK 293
           VR+ S R +   ++HL + H   +    +   +   C+RH+K
Sbjct: 261 VRRDSRRKNYGGVYHLDNHHVHHANHHAILGHSGFLCERHQK 302


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 202 LGICKRVENCRTADKDNEHPTCCLVTHP 119
           LG+ +  E     D   EHPTC L   P
Sbjct: 163 LGLHRANEPVVLDDSKEEHPTCALDLTP 190


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 167  SSTVLHTFAYPQH 205
            ++T+LH+F Y +H
Sbjct: 1733 NNTLLHSFMYHEH 1745


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 167  SSTVLHTFAYPQH 205
            ++T+LH+F Y +H
Sbjct: 1729 NNTLLHSFMYHEH 1741


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,399
Number of Sequences: 438
Number of extensions: 2695
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)