Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F19
(440 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g06960.1 68415.m00794 oxidoreductase, 2OG-Fe(II) oxygenase fa... 33 0.065
At1g73450.1 68414.m08503 protein kinase, putative similar to nuc... 29 1.8
At5g43270.3 68418.m05289 squamosa promoter-binding protein-like ... 28 2.4
At5g43270.2 68418.m05288 squamosa promoter-binding protein-like ... 28 2.4
At5g43270.1 68418.m05287 squamosa promoter-binding protein-like ... 28 2.4
At1g49200.1 68414.m05516 zinc finger (C3HC4-type RING finger) fa... 28 3.2
At5g51850.1 68418.m06428 expressed protein similar to unknown pr... 27 4.2
At1g73460.1 68414.m08504 protein kinase family protein contains ... 27 4.2
At1g49210.1 68414.m05517 zinc finger (C3HC4-type RING finger) fa... 27 4.2
At2g12940.1 68415.m01419 expressed protein 27 5.6
At3g44200.1 68416.m04739 protein kinase family protein contains ... 27 7.4
At3g23140.1 68416.m02916 zinc finger (C2H2 type) family protein ... 26 9.8
At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR... 26 9.8
At1g14970.1 68414.m01788 expressed protein contains Pfam PF03138... 26 9.8
At1g04810.1 68414.m00477 26S proteasome regulatory subunit, puta... 26 9.8
>At2g06960.1 68415.m00794 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to ripening protein E8,
Lycopersicon esculentum [PIR:S01642]; contains Pfam
domain PF03171, 2OG-Fe(II) oxygenase superfamily
Length = 148
Score = 33.5 bits (73), Expect = 0.065
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +2
Query: 146 VFVVLISSSTVLHTFAYPQHVPLIS---QAPSSVRTHNSPQYYSNSLPASQESQVAQERK 316
+F+VL++S+ + A Q PLIS +P V HN PQY E ++E K
Sbjct: 89 IFIVLVNSTKPRRSVASMQSFPLISVVKPSPKLVDEHNPPQYMDTEFATFLEYVFSREPK 148
>At1g73450.1 68414.m08503 protein kinase, putative similar to
nuclear serine/threonine protein kinase GI:3582644 from
[Rattus norvegicus]
Length = 1152
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 218 SQAPSSVRTHNSPQYYS-NSLPASQESQVAQERKFAEKPN 334
S + SSV+ +N+ S NS P+S + ERK AEK N
Sbjct: 733 SSSRSSVKENNATSIKSVNSSPSSLSNYARGERKHAEKEN 772
>At5g43270.3 68418.m05289 squamosa promoter-binding protein-like 2
(SPL2) identical to squamosa promoter binding
protein-like 2 [Arabidopsis thaliana] GI:5931645;
contains Pfam profile PF03110: SBP domain
Length = 419
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 164 SSSTVLHTFAYPQHVPLISQAPSSVRTHNSPQYYSNSLP 280
S S + H F+ IS + + VRTHN SLP
Sbjct: 56 SGSDIAHAFSKSSKSTSISSSSAEVRTHNFTSETGESLP 94
>At5g43270.2 68418.m05288 squamosa promoter-binding protein-like 2
(SPL2) identical to squamosa promoter binding
protein-like 2 [Arabidopsis thaliana] GI:5931645;
contains Pfam profile PF03110: SBP domain
Length = 419
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 164 SSSTVLHTFAYPQHVPLISQAPSSVRTHNSPQYYSNSLP 280
S S + H F+ IS + + VRTHN SLP
Sbjct: 56 SGSDIAHAFSKSSKSTSISSSSAEVRTHNFTSETGESLP 94
>At5g43270.1 68418.m05287 squamosa promoter-binding protein-like 2
(SPL2) identical to squamosa promoter binding
protein-like 2 [Arabidopsis thaliana] GI:5931645;
contains Pfam profile PF03110: SBP domain
Length = 419
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 164 SSSTVLHTFAYPQHVPLISQAPSSVRTHNSPQYYSNSLP 280
S S + H F+ IS + + VRTHN SLP
Sbjct: 56 SGSDIAHAFSKSSKSTSISSSSAEVRTHNFTSETGESLP 94
>At1g49200.1 68414.m05516 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 68 GKQCVQCFSDIDSGTRLRMCNK 133
G++CV C SD SG ++RM K
Sbjct: 133 GEECVICLSDFVSGEQIRMLPK 154
>At5g51850.1 68418.m06428 expressed protein similar to unknown
protein (emb|CAB81354.1)
Length = 590
Score = 27.5 bits (58), Expect = 4.2
Identities = 26/100 (26%), Positives = 42/100 (42%)
Frame = +2
Query: 89 FSDIDSGTRLRMCNKAAGWVFVVLISSSTVLHTFAYPQHVPLISQAPSSVRTHNSPQYYS 268
F D SGT CN+ + V I TV Q LIS+ S+V +++ Y
Sbjct: 463 FGDYPSGTLALGCNRRLLFDLVNEILIETVAKRRGNYQGSELISELCSAVARYSTKCY-- 520
Query: 269 NSLPASQESQVAQERKFAEKPNALKKVALDDLDEIQTNSI 388
P +E + ++ EK L++ + + EI+ I
Sbjct: 521 ---PVPEEIALVDVKRLLEKKKKLEEEGEEIIVEIEREII 557
>At1g73460.1 68414.m08504 protein kinase family protein contains
protein kinase domain Pfam:PF00069
Length = 1169
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 218 SQAPSSVRTHNSPQYYS-NSLPASQESQVAQERKFAEK 328
S + SSV+ +N+ S NS P+S + +ERK A+K
Sbjct: 747 SSSHSSVKDNNATSIKSLNSSPSSLSNYACEERKHADK 784
>At1g49210.1 68414.m05517 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 225
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 68 GKQCVQCFSDIDSGTRLRMCNK 133
G++CV C SD SG +LR+ K
Sbjct: 132 GEECVICLSDFVSGEQLRLLPK 153
>At2g12940.1 68415.m01419 expressed protein
Length = 294
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/57 (24%), Positives = 31/57 (54%)
Frame = +2
Query: 206 VPLISQAPSSVRTHNSPQYYSNSLPASQESQVAQERKFAEKPNALKKVALDDLDEIQ 376
+P +S +PSS R ++ P ++ S++S + ++ P +KK+A D+ ++
Sbjct: 25 LPPLSPSPSSSRRNSLPLMNPSTSMESRDSSMRFKKNSLLPPLGVKKIAPKDIGPLK 81
>At3g44200.1 68416.m04739 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 941
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1
Query: 155 QRTPNLLPCYTSLISYQNR 99
QRTP LP TSLI++Q+R
Sbjct: 489 QRTPPTLPRRTSLIAHQSR 507
>At3g23140.1 68416.m02916 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 172
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 164 SSSTVLHTFAYPQHVPLISQAPSSVRTHNSPQYY 265
SSS+ H+F P +PL SQ+PSS +P Y
Sbjct: 52 SSSSSSHSF--PFSLPLPSQSPSSSTNFTNPPPY 83
>At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1195
Score = 26.2 bits (55), Expect = 9.8
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +2
Query: 182 HTFAYPQHVPLISQAPSSVRTHNSPQYYSNSLPASQESQVAQERKFAE-KPNALKKVALD 358
H F H+ I Q TH+ + L + + + +E +A K LKK L
Sbjct: 267 HNFQRHLHMVNIRQKSKEYGTHSLERMILKELLSDTYNDITEEMTYASVKDELLKKKVLL 326
Query: 359 DLDEIQTNSISDG 397
LD++ + G
Sbjct: 327 VLDDVSSKKQIQG 339
>At1g14970.1 68414.m01788 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'auxin-independent growth promoter -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 562
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 175 SSPHVCISPTCSTYITGTQQCQN 243
+SPH+C S + S+ ++G QQ +N
Sbjct: 27 TSPHLCRSRSKSSSVSGQQQSRN 49
>At1g04810.1 68414.m00477 26S proteasome regulatory subunit,
putative contains similarity to 26S proteasome
regulatory subunit S1 SP:O88761, GI:3288594 from [Rattus
norvegicus]
Length = 1001
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 13 PSLKQHALSQVKKIQDTSW*TVCTVFQ*YRFWYEIKDV*QGSR 141
PSLK HALS + ++ D W + T YE ++ Q R
Sbjct: 21 PSLKLHALSYLIRLVDQFWPEISTSVPIIESLYEDEEFDQHQR 63
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,969,443
Number of Sequences: 28952
Number of extensions: 200775
Number of successful extensions: 612
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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