Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F18
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 241 3e-64
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 231 2e-61
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 142 1e-34
02_04_0580 + 24065830-24065967,24066163-24067425 30 1.2
09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468 29 2.0
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 27 6.2
03_06_0022 + 31085819-31086305,31086448-31087334 27 8.2
01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165 27 8.2
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 241 bits (589), Expect = 3e-64
Identities = 106/159 (66%), Positives = 132/159 (83%)
Frame = +1
Query: 16 EAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYP 195
EAKL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYP
Sbjct: 83 EAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYP 142
Query: 196 NLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYAS 375
NLKSVREL+YKRG+ KLN +R+P+ +N +IE+ L K +IIC+EDL+HEI TVG FK A+
Sbjct: 143 NLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEAN 202
Query: 376 NFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDQVNELL 492
NFLWPFKL P GG +KK HYV+GGD GNRED +NEL+
Sbjct: 203 NFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELI 241
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 231 bits (565), Expect = 2e-61
Identities = 105/165 (63%), Positives = 132/165 (80%), Gaps = 6/165 (3%)
Frame = +1
Query: 16 EAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYP 195
E KL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYP
Sbjct: 82 EEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYP 141
Query: 196 NLKSVRELVYKRGFAKLNGKRVPITSNSLIEKR------LSKQNIICVEDLIHEIFTVGE 357
NLKSVREL+YKRG+ KLN +R+P+T+N +IE+ L K +IIC+EDL+HEI TVG
Sbjct: 142 NLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICIEDLVHEIMTVGP 201
Query: 358 KFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDQVNELL 492
FK A+NFLWPFKL P GG +KK HYV+GGD GNRE+ +NEL+
Sbjct: 202 HFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELI 246
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 142 bits (345), Expect = 1e-34
Identities = 67/146 (45%), Positives = 97/146 (66%)
Frame = +1
Query: 19 AKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPN 198
+KL F IRI G + P +R++L+ RL Q+ GVF++ AT+ L + EP+I +G+PN
Sbjct: 86 SKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPN 145
Query: 199 LKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYASN 378
LK+V++L+YK+G L+ + P+TSN LIEK L + IIC+EDL+HEI +VG F+ ASN
Sbjct: 146 LKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVGPHFREASN 205
Query: 379 FLWPFKLNNPTGGWRKKTIHYVDGGD 456
FL PFKL P + K + DG +
Sbjct: 206 FLMPFKLKCPERRLQMKKKPFKDGAE 231
>02_04_0580 + 24065830-24065967,24066163-24067425
Length = 466
Score = 29.9 bits (64), Expect = 1.2
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Frame = +1
Query: 145 TVNMLRIAE--PYIAWGYPNLKSVRELVYKRG--FAKLNGKRVPITSNSLIEKRLSKQNI 312
T+ +L +A+ P A G+ + E+ + FA NG+ + S + I+ L
Sbjct: 71 TMAVLSVADSPPVSAIGFEGYEKRLEITFSEAPVFADPNGRGLRALSRAQIDSVLDLARC 130
Query: 313 ICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRK 426
V +L +E+F +S F++P+K+ T G K
Sbjct: 131 TIVSELSNEVFD-SYVLSESSLFVYPYKIVIKTCGTTK 167
>09_02_0371 + 8064616-8065683,8066194-8068318,8068425-8068468
Length = 1078
Score = 29.1 bits (62), Expect = 2.0
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Frame = +1
Query: 13 GEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGY 192
G+ K I +RG + ++ + +L +LR ++ ++N R+ + WG+
Sbjct: 621 GKMKFLEHIGLRGCHSLAELPSSITELPKLRHLSIDE-TKINAIPRGFKRLENLEMLWGF 679
Query: 193 P-------------NLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVE 324
P +L+ + L R + + VP +S + + K +K+N+IC+E
Sbjct: 680 PVHIIIENTGEYRCSLEELGPLSKLRKLKLIGLENVPYSSMATLAKLKTKENLICLE 736
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 299 LSLFSMSELEVIGTRFPFSLAKPRLYTNSRTLFKLG*PHAI 177
L L S+ LE + RFP L K + L KL PH I
Sbjct: 310 LKLPSIPALEELRKRFPLQLVKDLIPAGGDYLLKLPMPHVI 350
>03_06_0022 + 31085819-31086305,31086448-31087334
Length = 457
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 468 AVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTCV 367
A+ V V V L AP +SR+ WP++ TC+
Sbjct: 229 ALALVPNVLPVGPLEAPATSRLAGHFWPEDTTCL 262
>01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165
Length = 648
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 351 DSKYLMDEILNADD-VLFAKSLLDE*VGGDRDTLPVQFGETAFVHQLSDTLQVGVA 187
D K + ++ N D+ V + +++ V GD D P G LSDT+ + A
Sbjct: 380 DGKKEIVKVNNPDETVAYGAAVIGRHVAGDDDDKPTMLGPLDLPSFLSDTISIETA 435
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,844,547
Number of Sequences: 37544
Number of extensions: 245807
Number of successful extensions: 718
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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