Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F18
(492 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32) 265 2e-71
SB_34276| Best HMM Match : CsbD (HMM E-Value=1.5) 30 1.2
SB_16211| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6) 29 2.8
SB_27633| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_19021| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_14297| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) 27 6.4
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022) 27 6.4
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06) 27 8.4
>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
Length = 245
Score = 265 bits (649), Expect = 2e-71
Identities = 121/161 (75%), Positives = 142/161 (88%)
Frame = +1
Query: 10 PGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWG 189
P EA+LAFVIRIRG+N VSPKVRK+LQL RLRQINNGVFVRLNKAT NMLRI +PYIA+G
Sbjct: 81 PPEARLAFVIRIRGINGVSPKVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFG 140
Query: 190 YPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKY 369
YPNLKSVREL+YKRG+ K++ +RV +T NS++EK L K IICVEDLIHEIFTVGE FK
Sbjct: 141 YPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGIICVEDLIHEIFTVGEHFKE 200
Query: 370 ASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDQVNELL 492
ASNFLWPFKL++P GG+RKKT H+V+GGD GNRED++N L+
Sbjct: 201 ASNFLWPFKLSSPKGGFRKKTTHFVEGGDHGNREDKINGLV 241
>SB_34276| Best HMM Match : CsbD (HMM E-Value=1.5)
Length = 119
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 309 VLFAKSLLDE*VGGDRDTLPVQFGETAFVHQLSDTLQ 199
VL A +LLDE +G DRD P Q G+ A D Q
Sbjct: 3 VLSAAALLDELMGSDRDLAPDQKGKRAHWSDSEDGAQ 39
>SB_16211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -1
Query: 309 VLFAKSLLDE*VGGDRDTLPVQFGETA 229
VL A +LLDE +G DRD P Q G+ A
Sbjct: 3 VLSAAALLDELMGSDRDLAPDQKGKRA 29
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -3
Query: 259 HASRSVWRNRVCTPTLGHSSSWGSPMQYRAQRYEACSLWPC*DERTRRC 113
HA V R P +S + +P Q ++RY A S PC ER C
Sbjct: 586 HAPSQVNSERYNAPNQVNSERYNAPSQVNSERYNAPSQSPC-TERYTPC 633
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 262 GHASRSVWRNRVCTPTLGHSSSWGSPMQYRAQRYEACS 149
GH S++V R P+ +S + +P Q ++RY A S
Sbjct: 574 GHTSKNVNSERYHAPSQVNSERYNAPNQVNSERYNAPS 611
>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
Length = 528
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 310 IICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKT 432
+ C+ + E+ TV E F+ NFL FK+ P KKT
Sbjct: 344 LTCLCGDLSEMITVEEAFQMCENFLEKFKIFFPLDAPNKKT 384
>SB_27633| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 483
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -2
Query: 368 YLNFSPTVNISWMRSSTQMMFCLLSLFSMSELEVIGTRFPFSLAKPRLYTNSRTLFK 198
YL FSP N++W T+ L+S S +E + G+ FP S+ L N T K
Sbjct: 410 YLQFSPD-NMTWYCYGTEKNIALISGNSDAETVLYGSMFP-SIYTRYLRLNPHTWVK 464
>SB_19021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 590
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 32 LSSVFVVSTKYHPRYARYCSCSGCVRS 112
L S+FV +T RY YC+C G + S
Sbjct: 286 LGSIFVWATGNGGRYNDYCNCDGYITS 312
>SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 331 IHEIFTVGEKFKYASNFLWPFKLNN 405
++ + T KF YA++ LW F NN
Sbjct: 58 LNRVITTTGKFSYATDDLWQFSCNN 82
>SB_14297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 27.5 bits (58), Expect = 6.4
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 1/140 (0%)
Frame = +1
Query: 16 EAKLAFV-IRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGY 192
E KLA ++++G V PK RK+ Q+ L Q V + + + + ++ + A G+
Sbjct: 274 ELKLARERLKLQGFKAVQPK-RKISQV-TLAQAALSVVLEKEERSPSP---SQWFDAEGF 328
Query: 193 PNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYA 372
N K L G S++L + R +K+ +C EDL+ +GE +
Sbjct: 329 LNTKRSTSLNNVHSSENFTGILQSQKSSTLPDTR-TKRKSVCQEDLVDGTVCIGEP---S 384
Query: 373 SNFLWPFKLNNPTGGWRKKT 432
S L F++ G R K+
Sbjct: 385 SRVLSEFEIKKAIGHNRSKS 404
>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
Length = 2478
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 161 VSLSPILHGATPT*RVSESWCTNAVSPN*TGSVSRSPPTHSSRRDLA 301
VS+SP + G TPT S + + P +G +S S + R LA
Sbjct: 1951 VSVSPAIRGLTPTISSSSQFASQQEEPATSGRLSASDRSGRLRSHLA 1997
>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
Length = 1514
Score = 27.5 bits (58), Expect = 6.4
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Frame = +1
Query: 190 YPNLKSVRELVY--KR-GFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLI----HEIFT 348
Y + + V ++Y KR G K KR P N R+SK + + I E+FT
Sbjct: 121 YDDAQEVWAILYGKKRPGDPKKMKKRAPPKFNVGDRVRISKVKHVFAKVYIPNWTEEVFT 180
Query: 349 VGEKFKYASNFLWPFKLNNPTGGW 420
VG+++ + + ++L G W
Sbjct: 181 VGQRYNNTTQKNYAYRLREYDGSW 204
>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
Length = 863
Score = 27.1 bits (57), Expect = 8.4
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +2
Query: 233 VSPN*TGSVSRSPPTHSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTSCGHSN 397
VSP + S S PP SS ++ +SS+ SS S SSS+ +S S+
Sbjct: 570 VSPPSSSSSSSPPPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 624
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,667,760
Number of Sequences: 59808
Number of extensions: 276334
Number of successful extensions: 891
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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