Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F18
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   260   4e-70
Z78415-3|CAB01674.1|  530|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z73976-4|CAA98287.2|  965|Caenorhabditis elegans Hypothetical pr...    28   3.2  
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical...    28   4.2  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    28   4.2  
AF106591-1|AAD47131.2|  710|Caenorhabditis elegans Hypothetical ...    27   5.6  
Z82084-3|CAB04977.1|  780|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z77660-4|CAB01172.1|  501|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  260 bits (637), Expect = 4e-70
 Identities = 113/161 (70%), Positives = 138/161 (85%)
 Frame = +1

Query: 10  PGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWG 189
           P E K+AFV+RIRG+NQ+ PK RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY+AWG
Sbjct: 80  PAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWG 139

Query: 190 YPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKY 369
           YPN K++ +L+YKRG+AK++G RVPIT N+++E+ L K NIIC+EDL HEI TVG  FK 
Sbjct: 140 YPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKE 199

Query: 370 ASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDQVNELL 492
           A+NFLWPFKLNNPTGGW KKT H+V+GGDFGNREDQ+N LL
Sbjct: 200 ATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNREDQINNLL 240


>Z78415-3|CAB01674.1|  530|Caenorhabditis elegans Hypothetical
           protein C17G1.3a protein.
          Length = 530

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 298 SKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTI 435
           +KQ II  ++ + EIF+  EKF   SN +W  +++NP   W    I
Sbjct: 71  AKQIIIDADEEVVEIFSQTEKF--LSN-MWTMEMSNPLMMWMNPRI 113


>Z73976-4|CAA98287.2|  965|Caenorhabditis elegans Hypothetical
           protein T07C12.8 protein.
          Length = 965

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -2

Query: 461 PKSPPST**IVFLRQPPVGLFSLNGHRKLLAYLNFSPTVNISWMRSSTQMMFCLLS 294
           P SP +   IVFL    +   S + HR   +Y +F PT + S++R ++  +   LS
Sbjct: 100 PLSPTNILSIVFLSPYSLNYLSFSAHRSTFSYCSF-PTGHRSFVRPASANILLPLS 154


>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform b
            protein.
          Length = 1250

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 23/89 (25%), Positives = 40/89 (44%)
 Frame = -1

Query: 492  EELVDLVLAVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTCVLELLTDSKYLMDEILNAD 313
            ++ + +V   TE+  VD +  L   T S  ++F    E+  +    T+ ++ +   L A 
Sbjct: 915  DKKLKVVNVATELERVDHILPLRYATISHKIEFS--DEIKFIDGSKTNLQWTLSPPLEAG 972

Query: 312  DVLFAKSLLDE*VGGDRDTLPVQFGETAF 226
             VLF  S+  E +GG    +     ET F
Sbjct: 973  TVLFKVSIFREKMGGQDPPIITIQSETNF 1001


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform a
            protein.
          Length = 2456

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 23/89 (25%), Positives = 40/89 (44%)
 Frame = -1

Query: 492  EELVDLVLAVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTCVLELLTDSKYLMDEILNAD 313
            ++ + +V   TE+  VD +  L   T S  ++F    E+  +    T+ ++ +   L A 
Sbjct: 915  DKKLKVVNVATELERVDHILPLRYATISHKIEFS--DEIKFIDGSKTNLQWTLSPPLEAG 972

Query: 312  DVLFAKSLLDE*VGGDRDTLPVQFGETAF 226
             VLF  S+  E +GG    +     ET F
Sbjct: 973  TVLFKVSIFREKMGGQDPPIITIQSETNF 1001


>AF106591-1|AAD47131.2|  710|Caenorhabditis elegans Hypothetical
           protein T01A4.3 protein.
          Length = 710

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 298 SKQNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPT 411
           S+Q+  C    +H +  + ++F +    LW  +++NPT
Sbjct: 361 SRQSTKCDPRSLHTLMGLAQRFGFDYLILWAARIDNPT 398


>Z82084-3|CAB04977.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK1053.3 protein.
          Length = 780

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -1

Query: 492 EELVDLVLAVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTC 370
           + L++L+L       V+++ RLL P+ S  + ++  ++V C
Sbjct: 124 QALIELILKKFPGVGVEMLTRLLDPSESAYIIYDVIEQVKC 164


>Z77660-4|CAB01172.1|  501|Caenorhabditis elegans Hypothetical
           protein F38H4.4 protein.
          Length = 501

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -1

Query: 426 LAPTSSRVVQFEWPQEVTCVLELLTDSKY 340
           L  TS+   Q    Q V CVL LLTDS+Y
Sbjct: 270 LPHTSADFWQMIIEQRVKCVLLLLTDSEY 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,658,758
Number of Sequences: 27780
Number of extensions: 209838
Number of successful extensions: 645
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)