Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F18
(492 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 233 4e-62
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 233 4e-62
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 233 5e-62
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 233 5e-62
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 233 5e-62
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 231 3e-61
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 144 2e-35
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 30 0.74
At2g35540.1 68415.m04353 DNAJ heat shock N-terminal domain-conta... 30 0.74
At4g38240.2 68417.m05401 alpha-1,3-mannosyl-glycoprotein beta-1,... 29 1.3
At4g38240.1 68417.m05400 alpha-1,3-mannosyl-glycoprotein beta-1,... 29 1.3
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 29 1.7
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 27 5.2
At5g07630.1 68418.m00874 nuclear division RFT family protein low... 27 6.9
At4g32750.1 68417.m04660 expressed protein 27 6.9
At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putat... 27 6.9
At1g24650.1 68414.m03102 leucine-rich repeat family protein / pr... 27 6.9
At5g65910.1 68418.m08296 BSD domain-containing protein contains ... 27 9.1
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta... 27 9.1
At3g13380.1 68416.m01683 leucine-rich repeat family protein / pr... 27 9.1
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 233 bits (571), Expect = 4e-62
Identities = 103/159 (64%), Positives = 130/159 (81%)
Frame = +1
Query: 16 EAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYP 195
EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKATVNMLR EPY+ +GYP
Sbjct: 85 EAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYP 144
Query: 196 NLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYAS 375
NLKSV+EL+YKRG+ KLN +R+ +T NS++++ L K IICVEDLIHEI TVG FK A+
Sbjct: 145 NLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEAN 204
Query: 376 NFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDQVNELL 492
NFLWPF+L P GG +KK HYV+GGD GNRE+ +NEL+
Sbjct: 205 NFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELV 243
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 233 bits (571), Expect = 4e-62
Identities = 103/159 (64%), Positives = 130/159 (81%)
Frame = +1
Query: 16 EAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYP 195
EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKATVNMLR EPY+ +GYP
Sbjct: 80 EAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYP 139
Query: 196 NLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYAS 375
NLKSV+EL+YKRG+ KLN +R+ +T NS++++ L K IICVEDLIHEI TVG FK A+
Sbjct: 140 NLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEAN 199
Query: 376 NFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDQVNELL 492
NFLWPF+L P GG +KK HYV+GGD GNRE+ +NEL+
Sbjct: 200 NFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELV 238
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 233 bits (570), Expect = 5e-62
Identities = 103/159 (64%), Positives = 129/159 (81%)
Frame = +1
Query: 16 EAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYP 195
EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +GYP
Sbjct: 82 EAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYP 141
Query: 196 NLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYAS 375
NLKSV+EL+YKRGF KLN +R +T NS++++ L K IICVEDLIHEI TVG FK A+
Sbjct: 142 NLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEAN 201
Query: 376 NFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDQVNELL 492
NFLWPF+L P GG +KK HYV+GGD GNRE+ +NEL+
Sbjct: 202 NFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELV 240
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 233 bits (570), Expect = 5e-62
Identities = 103/159 (64%), Positives = 129/159 (81%)
Frame = +1
Query: 16 EAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYP 195
EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +GYP
Sbjct: 82 EAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYP 141
Query: 196 NLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYAS 375
NLKSV+EL+YKRGF KLN +R +T NS++++ L K IICVEDLIHEI TVG FK A+
Sbjct: 142 NLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEAN 201
Query: 376 NFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDQVNELL 492
NFLWPF+L P GG +KK HYV+GGD GNRE+ +NEL+
Sbjct: 202 NFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELV 240
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 233 bits (570), Expect = 5e-62
Identities = 103/159 (64%), Positives = 129/159 (81%)
Frame = +1
Query: 16 EAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYP 195
EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +GYP
Sbjct: 82 EAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYP 141
Query: 196 NLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYAS 375
NLKSV+EL+YKRGF KLN +R +T NS++++ L K IICVEDLIHEI TVG FK A+
Sbjct: 142 NLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEAN 201
Query: 376 NFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDQVNELL 492
NFLWPF+L P GG +KK HYV+GGD GNRE+ +NEL+
Sbjct: 202 NFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELV 240
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 231 bits (564), Expect = 3e-61
Identities = 101/159 (63%), Positives = 129/159 (81%)
Frame = +1
Query: 16 EAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYP 195
EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NMLR EPY+ +G+P
Sbjct: 80 EAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFP 139
Query: 196 NLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKYAS 375
NLKSV+EL+YKRG+ KLN +R+ +T NS++E+ L K IIC EDLIHEI TVG FK A+
Sbjct: 140 NLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFKEAN 199
Query: 376 NFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDQVNELL 492
NFLWPF+L P GG +KK HYV+GGD GNRE+ +NEL+
Sbjct: 200 NFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELI 238
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 144 bits (350), Expect = 2e-35
Identities = 66/163 (40%), Positives = 105/163 (64%), Gaps = 2/163 (1%)
Frame = +1
Query: 10 PGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWG 189
P ++ L F+IRI+G N + PK +++L +L+ + GVF + + L +PY+ +G
Sbjct: 82 PVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYG 141
Query: 190 YPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKY 369
YPN KSV++L+YK+G + G VP+T N++IE+ L + I+ +EDL++EI VG+ F+
Sbjct: 142 YPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVGDHFRE 201
Query: 370 ASNFLWPFKLNNPTGG--WRKKTIHYVDGGDFGNREDQVNELL 492
FL P KLN P RKK + + +GGD GNRED++N+L+
Sbjct: 202 VMRFLGPLKLNKPVADVLHRKKQV-FSEGGDTGNREDKINDLI 243
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 30.3 bits (65), Expect = 0.74
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Frame = -1
Query: 369 VLELLTDSKYLMDEILNADDVL----FAKSLLDE*VGGDRDTLPVQFGETAFVHQLSDTL 202
V ELL+++ L DE+L DDVL F SLL E RD V L TL
Sbjct: 2031 VQELLSENLNLHDELLRKDDVLKGLSFDLSLLQESASNSRDKKDETKEIMVHVEALEKTL 2090
Query: 201 QVGVAPCNIGLSDTKHVHCGLVETNE 124
+ +S + + L E+ E
Sbjct: 2091 ALKTFELEDAVSHAQMLEVRLQESKE 2116
>At2g35540.1 68415.m04353 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226:
DnaJ domain
Length = 575
Score = 30.3 bits (65), Expect = 0.74
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -2
Query: 398 SLNGHRKLLAYLNFSPTVNISWMRSSTQMMFCLLSLFSMSELEVIGTRFPFS 243
SLN + +++L+F ISWM+ S+ M C F +SE +I PFS
Sbjct: 396 SLNPFKVWISWLDFESEKLISWMKISSSHMPC--GRFRVSEKALIEQVKPFS 445
>At4g38240.2 68417.m05401 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
similar to N-acetylglucosaminyltransferase I from
Arabidopsis thaliana [gi:5139335]; contains AT-AC
non-consensus splice sites at intron 13
Length = 444
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 364 KYASNFLWPFKLNNPTGGWRKKTIHYVDGGDF 459
++ S +L P KLN+ T W+ K + Y+ G++
Sbjct: 321 QFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNY 352
>At4g38240.1 68417.m05400 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
similar to N-acetylglucosaminyltransferase I from
Arabidopsis thaliana [gi:5139335]; contains AT-AC
non-consensus splice sites at intron 13
Length = 444
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 364 KYASNFLWPFKLNNPTGGWRKKTIHYVDGGDF 459
++ S +L P KLN+ T W+ K + Y+ G++
Sbjct: 321 QFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNY 352
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 241 KLNGKRVPITSNSLIEKRLSKQNIICVEDL 330
K+N + + S IEK LS N+ C+E L
Sbjct: 438 KMNNNTISVDSTICIEKHLSAMNLRCIERL 467
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 27.5 bits (58), Expect = 5.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 68 GDTWLTPRIRMTNASLASPG 9
G TW+ P I +N S+ SPG
Sbjct: 138 GGTWIQPEIEESNKSMFSPG 157
>At5g07630.1 68418.m00874 nuclear division RFT family protein low
similarity to SP|P38206 Nuclear division RFT1 protein
{Saccharomyces cerevisiae}; contains Pfam profile
PF04506: Rft protein
Length = 401
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -1
Query: 483 VDLVLAVTEVAAVDVVNRLLAPTSSRVVQFEWPQEVTCVLELLTDSKYLMDEIL 322
V L +A+T A + V+ S Q W CVLEL+ + Y++ + L
Sbjct: 27 VPLGIAITIAACIFVLWWQNLSYSDPYAQAIWIHGFACVLELMAEPLYILSQTL 80
>At4g32750.1 68417.m04660 expressed protein
Length = 293
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 421 RKKTIHYVDGGDFGNREDQVNELL 492
R++ +D G+FGNR DQ E+L
Sbjct: 214 RRRAALTIDEGEFGNRNDQGLEML 237
>At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putative
/ citrate hydro-lyase/aconitase, putative strong
similarity to SP|P49608 Aconitate hydratase, cytoplasmic
(EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)
{Cucurbita maxima}; contains Pfam profiles PF00330:
Aconitase family (aconitate hydratase), PF00694:
Aconitase C-terminal domain
Length = 995
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = -3
Query: 232 RVCTPTL--GHSSSWGSPMQYRAQ 167
RVC+ + H SWGSP RAQ
Sbjct: 57 RVCSASTRWSHGGSWGSPASLRAQ 80
>At1g24650.1 68414.m03102 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 886
Score = 27.1 bits (57), Expect = 6.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 331 IHEIFTVGEKFKYASNFLWPFKLNNPTGGW 420
++ + ++ E F Y NF +K N+P GW
Sbjct: 327 VNTLLSIVEAFGYPVNFAEKWKGNDPCSGW 356
>At5g65910.1 68418.m08296 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 432
Score = 26.6 bits (56), Expect = 9.1
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = -1
Query: 327 ILNADDVLFAKSLLDE*VGGDRDTLPVQFGETAFVHQLSDTLQVGVAPCNIGLSDTKHVH 148
+L+ VL A+S+L + + R LPV+ G + + + L V +P + V
Sbjct: 234 LLSTPQVLEARSMLSQELQ-KRSKLPVEAGSSEANTVIVEPLTVPPSPETAAVKIVNPVE 292
Query: 147 CGLVETNEHAV 115
VET++H +
Sbjct: 293 SSDVETDKHPI 303
>At4g28470.1 68417.m04073 26S proteasome regulatory subunit, putative
contains Pfam domain PF01851: Proteasome/cyclosome repeat
Length = 1103
Score = 26.6 bits (56), Expect = 9.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 247 SVWRNRVCTPTLGHSSSW 194
+++RN +CT + HS SW
Sbjct: 1078 AIYRNFLCTTLISHSKSW 1095
>At3g13380.1 68416.m01683 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1164
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 299 LSLFSMSELEVIGTRFPFSLAKPRL 225
L++FS+S+ + G RFP SL+ +L
Sbjct: 228 LTVFSLSQNSISGDRFPVSLSNCKL 252
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,156,191
Number of Sequences: 28952
Number of extensions: 197363
Number of successful extensions: 595
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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