Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F17
(320 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 81 5e-17
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 79 1e-16
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 26 1.2
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 26 1.2
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 2.8
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 3.8
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 24 5.0
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac... 24 6.6
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 24 6.6
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 23 8.7
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 23 8.7
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 23 8.7
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 23 8.7
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 80.6 bits (190), Expect = 5e-17
Identities = 34/43 (79%), Positives = 38/43 (88%)
Frame = +1
Query: 10 AIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRFSQT 138
AIRRDP+INWIVN VHKHRE RGLTS GK SRG+GKGHRF+ +
Sbjct: 141 AIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRFNNS 183
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 79.4 bits (187), Expect = 1e-16
Identities = 33/43 (76%), Positives = 38/43 (88%)
Frame = +1
Query: 10 AIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRFSQT 138
AIRRDP+INWIVN VHKHRE RGLTS GK SRG+GKGHR++ +
Sbjct: 141 AIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRYNNS 183
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 26.2 bits (55), Expect = 1.2
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 226 NAESIVLFIACDAVARCCDVTRRR--DGNLPWFERSDV 119
N IVLF AV +CCD+ R GNL ++ D+
Sbjct: 153 NTTDIVLFPFVLAVIKCCDIVHREFLMGNL--YDEEDI 188
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 1.2
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 137 PREVPVAPPGYVATPCNCVASDKQ 208
P PV P GY T CV+S Q
Sbjct: 259 PESYPVPPSGYPLTSSTCVSSISQ 282
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.0 bits (52), Expect = 2.8
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -3
Query: 135 LREAMSLAETTRAFPCGRQTAHLAMFVYRIHDPIDLRITANS 10
L E + T+ FPC T+HL + + + + +I N+
Sbjct: 520 LSEEQPMELTSTVFPCENSTSHLEVEEAAMDETVAFQIRGNN 561
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 24.6 bits (51), Expect = 3.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 80 RPRISRCLCTAFTIQLILGSRRI 12
+P + CL ++F+ ++LGSR I
Sbjct: 815 KPFLQACLTSSFSTPVVLGSRLI 837
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 24.2 bits (50), Expect = 5.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 285 ILLGTSAFHLNIKTETNRKSMRNPLSCLSLATQLQ 181
++ GT+ TE RK + +SCL + Q Q
Sbjct: 484 VINGTALAIFKKDTEVARKVFESEISCLDFSAQFQ 518
>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 23.8 bits (49), Expect = 6.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 193 DAVARCCDVTRRRDGNLPWFERSDVPCRDH 104
D+ + ++ RRR N + RS++P RD+
Sbjct: 220 DSYSSYDELERRRSSNESYSRRSELPRRDY 249
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 23.8 bits (49), Expect = 6.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 153 SRRLVTSQHLATASQAINKTMDSALTFYSFLSLYSNG 263
++ L + HL+ + ++ T S LTF L L+ +G
Sbjct: 1013 TQSLQSFSHLSNHIEVLDSTRQSRLTFLCHLILHMHG 1049
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 23.4 bits (48), Expect = 8.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 102 SWSRQGTSLLSNQGRFPSRRLVTSQHLATAS 194
+W SL SNQG P+ + V + T S
Sbjct: 177 TWKHANESLQSNQGPVPNTKFVGLETTQTDS 207
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 23.4 bits (48), Expect = 8.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 109 DHESFSLRTSDRASRDVCVP 50
DHE RT A RDV P
Sbjct: 910 DHEELGQRTQLHAKRDVSTP 929
>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 23.4 bits (48), Expect = 8.7
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 79 LTSAGKSSRGLGKG-HRFSQTKGGSRRAA 162
++SAG S G GKG + T +RRAA
Sbjct: 236 VSSAGYSGEGYGKGTYATDTTAEANRRAA 264
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 23.4 bits (48), Expect = 8.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -1
Query: 248 RQKRIESQCGIHCLVYRLR 192
R+K +S G+ CLV+R++
Sbjct: 388 RKKDEDSAAGLRCLVFRIK 406
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,255,868
Number of Sequences: 5004
Number of extensions: 21793
Number of successful extensions: 80
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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