Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F17
(320 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 73 4e-14
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 73 4e-14
04_01_0555 + 7152196-7153065,7154805-7154960,7155058-7155130,715... 30 0.35
01_01_0652 + 4975091-4975585 30 0.47
08_02_0669 + 19868149-19870179 28 1.4
07_01_0886 - 7356591-7356662,7357002-7357079,7357373-7357444,735... 28 1.4
09_02_0328 - 7293547-7293855,7294161-7294274,7294348-7294429,729... 28 1.9
06_01_1010 + 7866158-7866661 27 2.5
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903 27 2.5
01_06_1362 - 36677281-36677574,36677661-36677959,36678435-366785... 27 3.3
06_03_1126 + 27805982-27806475,27806617-27807202 27 4.3
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 27 4.3
02_03_0251 + 16849905-16851308 27 4.3
11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152 26 5.7
10_07_0016 + 11826066-11826773 26 5.7
07_01_0135 - 989616-989702,990746-991013,991229-991566 26 5.7
06_03_1186 - 28260487-28262112,28262205-28262345,28262429-282625... 26 5.7
04_03_0455 - 16085401-16085775 26 5.7
01_06_0772 - 31864564-31864653,31864733-31864816,31865547-318656... 26 7.6
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 73.3 bits (172), Expect = 4e-14
Identities = 35/56 (62%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Frame = +1
Query: 1 ARGAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL-GKGHRFSQTKGGSRRAAW 165
A AIR DP+INW+ VHKHRE+RGLTSAGK RGL GKGH + + SRRA W
Sbjct: 243 AHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATW 297
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 73.3 bits (172), Expect = 4e-14
Identities = 35/56 (62%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Frame = +1
Query: 1 ARGAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL-GKGHRFSQTKGGSRRAAW 165
A AIR DP+INW+ VHKHRE+RGLTSAGK RGL GKGH + + SRRA W
Sbjct: 138 AHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATW 192
>04_01_0555 +
7152196-7153065,7154805-7154960,7155058-7155130,
7156261-7156367
Length = 401
Score = 30.3 bits (65), Expect = 0.35
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 63 SRDARSDVRREKLSWSRQGTSLLSNQGRFPSRRLVTSQHLATASQAIN 206
S A + VR KLSWSR S FP+ + +T+ HL + +N
Sbjct: 272 SLGALASVRNLKLSWSRSMDSHHGEFPNFPTFQKLTTLHLYKCNMCLN 319
>01_01_0652 + 4975091-4975585
Length = 164
Score = 29.9 bits (64), Expect = 0.47
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 85 SAGKSSRGLGKGHRFSQTKGGSRRAAW 165
+AGK GKG R + +GG RR W
Sbjct: 37 AAGKRREAAGKGGRQREARGGGRRMRW 63
>08_02_0669 + 19868149-19870179
Length = 676
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 1 ARGAIRRDPKINWIVNAVHKHREMR 75
A G + K W+VN +H+H E R
Sbjct: 636 ADGGAQGSKKARWLVNEIHRHYEQR 660
>07_01_0886 -
7356591-7356662,7357002-7357079,7357373-7357444,
7357511-7357600,7357669-7357783,7358509-7358639,
7358717-7358992,7360147-7360283,7360368-7360502,
7360958-7361325,7362111-7362229,7362295-7362339
Length = 545
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 163 RRRDGNLPWFERSDVPCRDHESF 95
R R G++ W E SD+ RDH F
Sbjct: 331 RARRGDIQWLEESDILGRDHYMF 353
>09_02_0328 -
7293547-7293855,7294161-7294274,7294348-7294429,
7295318-7295401,7296199-7296399,7296516-7296853,
7296968-7297084
Length = 414
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 76 GLTSAGKSSRGLGKGHRFSQTKGGSRRAA 162
G++ +G G G+G KGGSR AA
Sbjct: 174 GVSGSGAGGGGRGRGRGSDDAKGGSRAAA 202
>06_01_1010 + 7866158-7866661
Length = 167
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 64 REMRGLTSAGKSSRGLGKGHRFSQTKGGSRR 156
R+ G+ G + G GKG R+ GG RR
Sbjct: 57 RKEAGMPGGGARAPGSGKGRRWRPEHGGKRR 87
>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
Length = 405
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 25 PKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRFSQTKGGSRRA 159
P+++ VH+ RG ++AG R G S G SRRA
Sbjct: 264 PRVSGTKRPVHRGLGPRGWSTAGPRDRRSGSASGRSDGAGSSRRA 308
>01_06_1362 -
36677281-36677574,36677661-36677959,36678435-36678524,
36678973-36679141,36679247-36679369,36680020-36680046
Length = 333
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 1 ARGAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRG 108
AR A+RR ++ W + +H + R +A +RG
Sbjct: 281 ARPAMRRCAEVLWSIRRDFQHEQQRATAAAAAGARG 316
>06_03_1126 + 27805982-27806475,27806617-27807202
Length = 359
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +1
Query: 55 HKHREMRGLTSAGKSSRGLGKGHRFSQTKGGSRRA 159
H HR G + GH F +T+ G RRA
Sbjct: 231 HHHRGGGGFCCFTSNPETTSNGHSFRRTRAGGRRA 265
>02_04_0481 + 23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +3
Query: 30 DQLDRECGTQTSRDARSDVRREKLSWSRQGTSLLSNQGRFPSRRLVTSQHLATASQAINK 209
++LDR G S DV EKLS SLLS +++ T + +A +++ +
Sbjct: 1084 EELDRSHGNLQSHSTEHDVYLEKLSTLVMDNSLLSLMTEEFGKKVSTLREMALIVRSMRE 1143
Query: 210 TM 215
+
Sbjct: 1144 QL 1145
>02_03_0251 + 16849905-16851308
Length = 467
Score = 26.6 bits (56), Expect = 4.3
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = -2
Query: 208 LFIACDAVARCCDVTRRRDGNL--PWFERSDVPCRDHESFSLRTSDR 74
+F AC AVA D R + W ER CRD FS+ S R
Sbjct: 350 VFTACAAVAAAIDEAVRGEPAYWEGWKERIVEACRDDAPFSVAGSTR 396
>11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152
Length = 1044
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 111 RQGTSLLSNQGRFPSRRLVTSQHLATASQAINKTMDSA 224
R+ +SLL R + L T+QHLA Q + + ++ A
Sbjct: 172 RRSSSLLPRTVRATKKLLQTNQHLAQELQRLKRMVEEA 209
>10_07_0016 + 11826066-11826773
Length = 235
Score = 26.2 bits (55), Expect = 5.7
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -1
Query: 215 HCLVYRLRRSCKVLRRNQAARREPPLV*EKRCPLPRPR---ELFPADVRPRISR 63
H L + L S VL A+R PP +R P PRPR L P R R SR
Sbjct: 170 HLLGFSLDASAAVL----ASRCRPPPTPARRRPPPRPRLASRLRPPPARRRRSR 219
>07_01_0135 - 989616-989702,990746-991013,991229-991566
Length = 230
Score = 26.2 bits (55), Expect = 5.7
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2
Query: 164 GYVATPCNCVAS 199
GY TPCNC++S
Sbjct: 81 GYSCTPCNCISS 92
>06_03_1186 -
28260487-28262112,28262205-28262345,28262429-28262573,
28262964-28263067,28263324-28263456,28263904-28264013,
28265144-28265167
Length = 760
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -2
Query: 172 DVTRRRDGNLPWFERSDVPC-RDHESFSLRT 83
D+ + + NL RS +PC DH LRT
Sbjct: 374 DLEKENESNLGHHHRSHIPCAADHADSGLRT 404
>04_03_0455 - 16085401-16085775
Length = 124
Score = 26.2 bits (55), Expect = 5.7
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 4 RGAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRFSQTKGGSRR 156
RG RR+ ++ WI + H +TSA SS G G + T RR
Sbjct: 66 RGCDRREARLRWIGPPLRPH--AHDVTSAAASSDSDGYGGTAAATSTTRRR 114
>01_06_0772 -
31864564-31864653,31864733-31864816,31865547-31865603,
31865700-31865828,31866704-31866790,31866856-31866933,
31867150-31867306,31868000-31868141,31868835-31868986,
31869118-31869371,31869819-31869896
Length = 435
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 99 LSWSRQGTSLLSNQGRFPSRRLVTSQHLATASQAINKTMDSALTFYSFLSLY 254
L+W T++L GRF SR+LV + T+ + K + + + F+ +
Sbjct: 109 LNWHFFFTAMLFTYGRFLSRQLVNT---VTSDHLLYKVVSGLIKYQMFICYF 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,678,191
Number of Sequences: 37544
Number of extensions: 171072
Number of successful extensions: 679
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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