Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F17
(320 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 1e-14
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.5
SB_51163| Best HMM Match : Adeno_PIX (HMM E-Value=0.96) 28 1.9
SB_11519| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.6
SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33) 27 2.6
SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20) 27 2.6
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 27 3.4
SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36) 27 3.4
SB_21688| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_7150| Best HMM Match : Ets (HMM E-Value=2e-38) 27 4.5
SB_34308| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.9
SB_12468| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-30) 26 5.9
SB_59619| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.9
SB_6367| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.84) 26 5.9
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.9
SB_32470| Best HMM Match : BRE (HMM E-Value=0.98) 26 7.9
>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 75.4 bits (177), Expect = 1e-14
Identities = 31/52 (59%), Positives = 39/52 (75%)
Frame = +1
Query: 10 AIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRFSQTKGGSRRAAW 165
AIRRD +INWI HKHRE+RGLT+AG +RG+ KGH +++ G SRRA W
Sbjct: 141 AIRRDARINWICKPTHKHRELRGLTAAGTKNRGMRKGHNYNKVIGSSRRANW 192
>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5445
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 188 CVASDKQDNGFRIDFLFVSVFIFKWKADVPN 280
C SDK+D G+ ++ F +F F K+D N
Sbjct: 2075 CTGSDKRDIGYALNTSFYDMFNFTKKSDENN 2105
>SB_51163| Best HMM Match : Adeno_PIX (HMM E-Value=0.96)
Length = 772
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 138 QGRFPSRRLVTSQHLATASQAINKTMDSAL-TFYSFLSLYSNG 263
QG PS+RLV+S + ++QA ++SA + S L+ YS G
Sbjct: 164 QGLVPSQRLVSSPNYGYSNQAAMMPVESATQSRQSLLNSYSAG 206
>SB_11519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 122 IASLKPREVPVAPPGYVATPCNCVASDKQDNGFRIDFLFVSVFIF 256
+AS+ P + Y+ P C Q+N F+ LFVSV +F
Sbjct: 152 LASIAPIQYVAIGERYIFHPGKCFCF--QENSFKPSTLFVSVIVF 194
>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
Length = 300
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 52 VHKHREMRGLTSAGKSSRGLGKGHRFSQTK 141
+H + ++GLT A S LG GH +S+ K
Sbjct: 61 MHFDKMIKGLTGAMASKAQLGLGHSYSRAK 90
>SB_34753| Best HMM Match : WD40 (HMM E-Value=5.3e-20)
Length = 645
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 185 CKVLRRNQAARREPPLV*EKRCPLPRPRELFPADVRP--RISRC 60
C+ + N+ A +PPL K C + PR+ + +P RI C
Sbjct: 490 CRTMHCNECAPSQPPLCQIKDCEVCTPRQWVKSPRKPGGRIEGC 533
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 113 PRPRELFPADVRPRISRCLCTAFTIQLI 30
PRP + PA P + CL T+QL+
Sbjct: 1638 PRPDMVVPAVRDPTVKSCLAACLTVQLM 1665
>SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36)
Length = 1677
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = +2
Query: 89 QGKALVVSARDIASLKPREVPVAPPGYVATPCN--CVASDKQDNGFRIDFLFVSVFIFKW 262
Q +AL + R S ++P+ G A PCN +++++ D F W
Sbjct: 161 QARALESAMRSSESYGAPQIPINATGLPALPCNSTSLSAEQPDESTVATMKPDKATCFLW 220
Query: 263 KADVPN 280
K + P+
Sbjct: 221 KQETPS 226
>SB_21688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1078
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 223 AESIVLFIACDAVARCCDVTRRRDGNLPWFERSDVPCRDHESFSLR 86
A+S V +ACD+V R + DG++ ++R +P D +LR
Sbjct: 972 ADSCVTSLACDSVGRSLLIAGCGDGSVRLYDRR-LPPSDSRVMALR 1016
>SB_7150| Best HMM Match : Ets (HMM E-Value=2e-38)
Length = 188
Score = 26.6 bits (56), Expect = 4.5
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +3
Query: 90 REKLSWSRQGTSLLSNQGRFPSRRLVTSQHLATASQAINKTMDSALTFYSFLSLYSNGKP 269
REKL ++ L S R P+RR V A + + K + + SFLS + P
Sbjct: 115 REKLISTKIKACLPSETDRMPNRRSVELISRAHENTCMCKESEDQNSASSFLSRRATKPP 174
Query: 270 MCL 278
C+
Sbjct: 175 SCM 177
>SB_34308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 517
Score = 26.2 bits (55), Expect = 5.9
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +3
Query: 42 RECGTQTSRDARSDVRREKLSWSRQGTSLLSNQGRFP-SRRLVTSQHLATASQAINKTMD 218
R+C TQTSR+ + EK + +LL+ P +++ L A N T +
Sbjct: 365 RKCPTQTSREVGEKGQVEKCN-----QTLLAMLRTLPENQKSKWKDSLNKVVHAYNCTRN 419
Query: 219 SALTFYSFLSLYSNGKPMCLIKY 287
+ F F LY G P L Y
Sbjct: 420 DSTGFSPFYLLYGRGGPGKLRSY 442
>SB_12468| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-30)
Length = 824
Score = 26.2 bits (55), Expect = 5.9
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Frame = +3
Query: 84 VRREKLSWSR----QGTSLLSNQGRFPSR-RLVTSQ--HLATASQAINKTM 215
+R E+ WS+ QG SL S++GR SR ++T++ + SQ+ N+T+
Sbjct: 135 LRTERKLWSQELAQQGASLASDRGRLESRIEVLTAELNQMKKQSQSDNETI 185
>SB_59619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 45 ECGTQTSRDARSDVRREKLSWSRQGTSLL 131
E T+T S VRRE L +S GTS+L
Sbjct: 123 ESRTETPGPWTSGVRRESLFFSASGTSIL 151
>SB_6367| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.84)
Length = 563
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 190 AVARCCDVTRRRDGNLPWFERSDVPCRDHESFSLRTSDRASRDVCV 53
A A V + DG+ W ER P R H + +S++A RDV +
Sbjct: 137 ACAETQTVIYQEDGSTQWEERDIGPMRAHGTSKSASSNKA-RDVAM 181
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 128 KRCPLPRPRELFPADVRPRISRC 60
K+ +PRP L ++R R+SRC
Sbjct: 1810 KQFRIPRPETLKAGNLRERVSRC 1832
>SB_32470| Best HMM Match : BRE (HMM E-Value=0.98)
Length = 559
Score = 25.8 bits (54), Expect = 7.9
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -1
Query: 218 IHCLVYRLRRSCKVLRRNQAARREPPLV*EKRCPLPRPRELFPADVRPRISRCLCTAFT 42
++ +V +L RSC V R Q++ PPL P + L D++P ++ L FT
Sbjct: 278 LYSVVAQLVRSCDVSARMQSSMGSPPLA----NPFGEGQPLM--DLQPDVTEALFNKFT 330
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,004,298
Number of Sequences: 59808
Number of extensions: 192944
Number of successful extensions: 617
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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