Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F17
(320 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88168-3|AAC24397.1| 204|Caenorhabditis elegans Ribosomal prote... 80 4e-16
AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic in... 28 1.3
AC024757-4|AAK68429.2| 371|Caenorhabditis elegans Methionine am... 28 1.7
Z92782-10|CAE17812.1| 377|Caenorhabditis elegans Hypothetical p... 27 4.0
AC024755-7|AAO91688.1| 833|Caenorhabditis elegans Hypothetical ... 27 4.0
AC024755-6|AAF59639.1| 877|Caenorhabditis elegans Hypothetical ... 27 4.0
Z81091-6|CAE17821.2| 306|Caenorhabditis elegans Hypothetical pr... 26 7.0
Z75952-8|CAH10792.1| 306|Caenorhabditis elegans Hypothetical pr... 26 7.0
U88309-3|AAB42335.2| 333|Caenorhabditis elegans Hypothetical pr... 25 9.2
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 25 9.2
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 25 9.2
>U88168-3|AAC24397.1| 204|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 15 protein.
Length = 204
Score = 79.8 bits (188), Expect = 4e-16
Identities = 35/52 (67%), Positives = 39/52 (75%)
Frame = +1
Query: 10 AIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRFSQTKGGSRRAAW 165
AIRR+P WI VHKHRE RGLTSAG+ SRGLGKG RFS T+GGS+ W
Sbjct: 141 AIRRNPDTQWITKPVHKHREQRGLTSAGRKSRGLGKGWRFSATRGGSQAKNW 192
>AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic
initiation factor protein3.E protein.
Length = 432
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 250 KDRNE*KVNAESIVLFIACDAVARCCDVTRRRDGNL 143
K+R+E K +S+V + V D R RDGN+
Sbjct: 76 KERDELKSKVDSVVAILEIPEVKEMMDNNRERDGNV 111
>AC024757-4|AAK68429.2| 371|Caenorhabditis elegans Methionine
aminopeptidase protein 1 protein.
Length = 371
Score = 27.9 bits (59), Expect = 1.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 175 CDVTRRRDGNLPWF 134
C++ +RDGN PWF
Sbjct: 350 CEILTKRDGNRPWF 363
>Z92782-10|CAE17812.1| 377|Caenorhabditis elegans Hypothetical
protein F14F8.10 protein.
Length = 377
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 282 LLGTSAFHLNIKTE--TNRKSMRNPLSCLSLATQLQ 181
LL T++F N+ E + MR P+ CLS T L+
Sbjct: 88 LLRTASFVFNVSLEYYAEIRKMRTPVRCLSPTTYLE 123
>AC024755-7|AAO91688.1| 833|Caenorhabditis elegans Hypothetical
protein Y34B4A.4b protein.
Length = 833
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 150 PSRRLVTSQHLATASQAINKTMDSALTFYSFLSLYSNGKPMCLIKYI 290
P RL S+++ A + MD+A ++ ++ +L KP C + YI
Sbjct: 737 PLARLEWSKNIKDALKEHTAVMDTAQSYKNYRALLQTAKPPC-VPYI 782
>AC024755-6|AAF59639.1| 877|Caenorhabditis elegans Hypothetical
protein Y34B4A.4a protein.
Length = 877
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 150 PSRRLVTSQHLATASQAINKTMDSALTFYSFLSLYSNGKPMCLIKYI 290
P RL S+++ A + MD+A ++ ++ +L KP C + YI
Sbjct: 737 PLARLEWSKNIKDALKEHTAVMDTAQSYKNYRALLQTAKPPC-VPYI 782
>Z81091-6|CAE17821.2| 306|Caenorhabditis elegans Hypothetical
protein F55H12.6a protein.
Length = 306
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 67 EMRGLTSAGKSSRGLGKGHRFSQT 138
E+R GK +R LGK HR S T
Sbjct: 120 EVRRANETGKFNRVLGKRHRISPT 143
>Z75952-8|CAH10792.1| 306|Caenorhabditis elegans Hypothetical
protein F55H12.6a protein.
Length = 306
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 67 EMRGLTSAGKSSRGLGKGHRFSQT 138
E+R GK +R LGK HR S T
Sbjct: 120 EVRRANETGKFNRVLGKRHRISPT 143
>U88309-3|AAB42335.2| 333|Caenorhabditis elegans Hypothetical
protein T23B3.6 protein.
Length = 333
Score = 25.4 bits (53), Expect = 9.2
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 149 PVAPPGYVATPCNCVASDKQDNGFRIDFLFVSVFIFKWKADVPN-KIYFYL 298
PV+P G+ A P N F I FL VSVFI W+A P K FY+
Sbjct: 14 PVSP-GWPAIPSGSYGEIVL-NVF-IVFLNVSVFIVLWRAIKPEYKACFYI 61
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +1
Query: 16 RRDP-KINWIVNAVHKHREMR 75
R DP K++W V AVHK E R
Sbjct: 438 RDDPSKLSWKVTAVHKRLETR 458
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +1
Query: 16 RRDP-KINWIVNAVHKHREMR 75
R DP K++W V AVHK E R
Sbjct: 438 RDDPSKLSWKVTAVHKRLETR 458
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,209,750
Number of Sequences: 27780
Number of extensions: 137333
Number of successful extensions: 468
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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