Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F17
(320 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B) 75 1e-14
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A) 75 1e-14
At1g12580.1 68414.m01461 protein kinase family protein contains ... 29 0.92
At5g24330.1 68418.m02867 PHD finger family protein / SET domain-... 27 2.8
At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011 P... 27 3.7
At5g51670.1 68418.m06406 expressed protein contains Pfam domain ... 26 4.9
At2g26160.1 68415.m03139 F-box family protein contains F-box dom... 26 4.9
At4g22520.1 68417.m03250 protease inhibitor/seed storage/lipid t... 26 6.5
At1g02020.2 68414.m00122 nitroreductase family protein contains ... 26 6.5
At1g02020.1 68414.m00121 nitroreductase family protein contains ... 26 6.5
At5g64600.1 68418.m08118 expressed protein similar to axi 1 [Nic... 25 8.6
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 25 8.6
At5g23750.2 68418.m02787 remorin family protein contains Pfam do... 25 8.6
At5g23750.1 68418.m02786 remorin family protein contains Pfam do... 25 8.6
At4g00740.1 68417.m00101 dehydration-responsive protein-related ... 25 8.6
At3g18810.1 68416.m02389 protein kinase family protein contains ... 25 8.6
At2g27830.1 68415.m03374 expressed protein 25 8.6
At1g48090.2 68414.m05363 C2 domain-containing protein contains P... 25 8.6
At1g48090.1 68414.m05362 C2 domain-containing protein contains P... 25 8.6
>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
Length = 204
Score = 74.9 bits (176), Expect = 1e-14
Identities = 35/56 (62%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Frame = +1
Query: 1 ARGAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL-GKGHRFSQTKGGSRRAAW 165
A A+R DP+INWI N VHKHRE+RGLTS GK +RGL GKGH + + SRRA W
Sbjct: 138 AHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNR-PSRRATW 192
>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
Length = 204
Score = 74.9 bits (176), Expect = 1e-14
Identities = 35/56 (62%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Frame = +1
Query: 1 ARGAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGL-GKGHRFSQTKGGSRRAAW 165
A A+R DP+INWI N VHKHRE+RGLTS GK +RGL GKGH + + SRRA W
Sbjct: 138 AHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNR-PSRRATW 192
>At1g12580.1 68414.m01461 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains similarity
to calcium-dependent protein kinase GI:5162877 from
[Marchantia polymorpha]
Length = 522
Score = 28.7 bits (61), Expect = 0.92
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +3
Query: 15 SP*S*DQLDR--ECG-TQTSRDARSDVRREKLSWSRQGTSLLSNQGR 146
SP S QL+R E G QT +S+ RRE+ +WSR + L S + R
Sbjct: 436 SPDSSSQLERRDEAGENQTEAGGKSETRRERGNWSRM-SGLHSKRNR 481
>At5g24330.1 68418.m02867 PHD finger family protein / SET
domain-containing protein contains Pfam domain, PF00628:
PHD-finger and PF00856: SET domain
Length = 349
Score = 27.1 bits (57), Expect = 2.8
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 87 RREKLSWSRQGTSLLS-NQGRFPSRRLVTSQHLATASQAINKTMDSALTFYS 239
++ L S++ LL N P RRL LATA +A N + LT+ S
Sbjct: 122 KKTSLVMSKKKRRLLPYNPSNDPQRRLEQMASLATALRASNTKFSNELTYVS 173
>At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011
Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)
{Mus musculus}; contains Pfam profile PF01433: Peptidase
family M1
Length = 879
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 114 AETTRAFPCGRQTAHLAMFVYRIHDPIDLRITANSP 7
A+ R FPC + A A F + P DL +N P
Sbjct: 140 ADARRCFPCWDEPACKATFKITLEVPTDLVALSNMP 175
>At5g51670.1 68418.m06406 expressed protein contains Pfam domain
PF05003: protein of unknown function (DUF668)
Length = 474
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 126 LLSNQGRFPSRRLVTSQHLATASQAINKTM 215
L N R+ S R QH+ATA+ + N+ M
Sbjct: 395 LAQNMIRWQSERSFEQQHMATATNSQNRVM 424
>At2g26160.1 68415.m03139 F-box family protein contains F-box domain
Pfam:PF00646
Length = 359
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 242 KRIESQCGIHCLVYRLRRSCKVLRRNQ 162
KR+ CG C++++LR +RR+Q
Sbjct: 239 KRLVEYCGDLCIIHQLRLKKAYIRRSQ 265
>At4g22520.1 68417.m03250 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
profile: PF00234 protease inhibitor/seed storage/LTP
family
Length = 118
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 126 LLSNQGRFPSRRLVTSQHLATASQAINKTMDSALTFYSFLSL 251
L++NQ P LVT ATAS I + +T ++FL++
Sbjct: 57 LINNQSVLPCCTLVTGLDAATASACICNAV--RITIFNFLTI 96
>At1g02020.2 68414.m00122 nitroreductase family protein contains
Pfam PF00881: nitroreductase family protein profile;
contains Prosite PS00343: Gram-positive cocci surface
proteins 'anchoring' hexapeptide
Length = 543
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 144 SLGLREAMSLAETTRAFPCGRQTAHLAMFVYRI 46
S G + LA RA P HLA+FV+R+
Sbjct: 443 STGESQKEQLALPFRALPWDTAEVHLALFVHRV 475
>At1g02020.1 68414.m00121 nitroreductase family protein contains
Pfam PF00881: nitroreductase family protein profile;
contains Prosite PS00343: Gram-positive cocci surface
proteins 'anchoring' hexapeptide
Length = 642
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 144 SLGLREAMSLAETTRAFPCGRQTAHLAMFVYRI 46
S G + LA RA P HLA+FV+R+
Sbjct: 443 STGESQKEQLALPFRALPWDTAEVHLALFVHRV 475
>At5g64600.1 68418.m08118 expressed protein similar to axi 1
[Nicotiana tabacum] GI:559921; contains Pfam profile
PF03138: Plant protein family
Length = 522
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 4 RGAIRRDPKINWIVNAVHKHRE 69
RG ++ PK++ VN +HK R+
Sbjct: 458 RGQLKEGPKLSNFVNQMHKDRQ 479
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 85 SAGKSSRGLGKGHRFSQTKGGSR 153
S + SRG G+G R Q+ GG R
Sbjct: 861 SGRRGSRGRGRGGRGGQSSGGRR 883
>At5g23750.2 68418.m02787 remorin family protein contains Pfam
domain, PF03766: Remorin, N-terminal region; contains
Pfam domain, PF03763: Remorin, C-terminal region
Length = 201
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 125 ASLKPREVPVAPPGYVATPCNCVASDKQDN 214
A + P+E PVAPP + +P A +KQ++
Sbjct: 31 ADVAPQEKPVAPPPVLPSP--APAEEKQED 58
>At5g23750.1 68418.m02786 remorin family protein contains Pfam
domain, PF03766: Remorin, N-terminal region; contains
Pfam domain, PF03763: Remorin, C-terminal region
Length = 202
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 125 ASLKPREVPVAPPGYVATPCNCVASDKQDN 214
A + P+E PVAPP + +P A +KQ++
Sbjct: 31 ADVAPQEKPVAPPPVLPSP--APAEEKQED 58
>At4g00740.1 68417.m00101 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 600
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 185 CKVLRRNQAARREPPLV*EKRCPLPRPREL 96
C+ RRN RE E+ CPLP L
Sbjct: 94 CEDPRRNSQLSREMNFYRERHCPLPEETPL 123
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 4 RGAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRG--LGKG 120
R + RR PK++ IV A+ + L+ GK+ + LG+G
Sbjct: 593 RHSARRRPKMSQIVRALEGDATLDDLSEGGKAGQSSFLGRG 633
>At2g27830.1 68415.m03374 expressed protein
Length = 190
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3
Query: 39 DRECGTQTSRDARSDVRREKLSWSRQGTSLLSNQGRFPSRRLVTSQHLATASQAI 203
+R+ +T + R + + +S+ +GT+ LSN G RR T L + Q+I
Sbjct: 5 NRKTTPETEKSHRRKLSEKAMSFHGRGTTPLSNPGEL--RRPKTLPELFSTGQSI 57
>At1g48090.2 68414.m05363 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 3427
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 149 PVAPPGYVATPC 184
PVAPPGYV+ C
Sbjct: 2347 PVAPPGYVSLGC 2358
>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 4144
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 149 PVAPPGYVATPC 184
PVAPPGYV+ C
Sbjct: 2347 PVAPPGYVSLGC 2358
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,802,485
Number of Sequences: 28952
Number of extensions: 126632
Number of successful extensions: 418
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 350523880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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