Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F15
(412 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 221 3e-59
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 219 2e-58
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 118 5e-28
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 81 7e-17
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 29 0.21
SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 2.0
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 26 2.6
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 2.6
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 25 6.1
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 24 8.0
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 24 8.0
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 24 8.0
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch... 24 8.0
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 24 8.0
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 24 8.0
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S... 24 8.0
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 221 bits (541), Expect = 3e-59
Identities = 100/125 (80%), Positives = 113/125 (90%)
Frame = +1
Query: 10 AIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNR 189
++YPAPQVST+VVEPYNS+LTTH TL++SDC FMVDNEA YDICRRNLDIERPTY NLNR
Sbjct: 174 SVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNR 233
Query: 190 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 369
LI Q+VSSITASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++SA KA+HE SV
Sbjct: 234 LIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQ 293
Query: 370 EITER 384
EIT +
Sbjct: 294 EITNQ 298
Score = 24.2 bits (50), Expect = 8.0
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +2
Query: 380 NACFEPANQMV 412
N CFEP NQMV
Sbjct: 297 NQCFEPYNQMV 307
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 219 bits (534), Expect = 2e-58
Identities = 98/125 (78%), Positives = 113/125 (90%)
Frame = +1
Query: 10 AIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNR 189
++YPAPQVST+VVEPYNS+LTTH TL+ +DC FMVDNE+ YDICRRNLDIERP+Y NLNR
Sbjct: 170 SVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNR 229
Query: 190 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 369
LI Q+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++SA KA+HE SV
Sbjct: 230 LIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQ 289
Query: 370 EITER 384
EIT +
Sbjct: 290 EITNQ 294
Score = 24.2 bits (50), Expect = 8.0
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +2
Query: 380 NACFEPANQMV 412
N CFEP NQMV
Sbjct: 293 NQCFEPYNQMV 303
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 118 bits (283), Expect = 5e-28
Identities = 52/129 (40%), Positives = 84/129 (65%)
Frame = +1
Query: 10 AIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNR 189
++ PAP+ S VVEPYN+ L+ H +E+SD F +DNEA+ I L I+ P+Y +LN
Sbjct: 168 SVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNH 227
Query: 190 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 369
L+ +++ +T S RF G LN DL + N+VP+PR+HF +V +AP+ + + + +SV
Sbjct: 228 LVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVP 287
Query: 370 EITERLLRA 396
E+T+++ A
Sbjct: 288 ELTQQMFDA 296
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 81.0 bits (191), Expect = 7e-17
Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 4/131 (3%)
Frame = +1
Query: 10 AIYPAPQ-VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 186
+++P Q VS VV+PYNS+L ++D ++DN A+ I L + PT+ N
Sbjct: 170 SVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQN 229
Query: 187 RLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS---AEKAYHEQ 357
+L+ ++S+ T +LR+ G +N DL +L+P PR HF L +Y P + E +
Sbjct: 230 QLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRK 289
Query: 358 LSVAEITERLL 390
+V ++ RLL
Sbjct: 290 TTVLDVMRRLL 300
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 29.5 bits (63), Expect = 0.21
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +2
Query: 98 IVLSWSTMKPSMTSAAVTWILNARPTPTSIVLSARSYH 211
++ S+ T KP + TW +N R P S+ + H
Sbjct: 37 VIASYPTFKPVVNERCGTWYVNRRHAPISVYFKSTDGH 74
>SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 135
Score = 26.2 bits (55), Expect = 2.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 252 DIEGAVETQRGGNR*YDLADKTIEVGVGRAFN 157
DIE E GN+ ++L +K I++ G+ FN
Sbjct: 58 DIEAFAEYALDGNKYFNLINKIIDMQDGKRFN 89
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 2.6
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = +2
Query: 110 WSTMKPSMTSAAVTWILNARPTPTSIVLSARSYHRLPPLCVSTAPSMSI*RSSRPTWC 283
W T KP + A W ++ + + + S +PP S A + + RP WC
Sbjct: 428 WRTHKPLILRATPQWFISLENERKTAIKALDSVKMIPP--NSRARLLGF-LNGRPEWC 482
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.8 bits (54), Expect = 2.6
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +2
Query: 155 ILNARPTPTSIVLSARSYHRL 217
I NAR T V S RSYHRL
Sbjct: 1499 IKNARAKLTKAVKSLRSYHRL 1519
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 24.6 bits (51), Expect = 6.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 241 ALNVDLTEFQTNLVPYPRIHFPLVT 315
A +V++ E +TN +P HFP T
Sbjct: 368 AQSVEVPENETNQIPTTEEHFPATT 392
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 24.2 bits (50), Expect = 8.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 120 IVDHESTIGVFQGGVGCKDRVVGLYNSSGHLGCGIDSAS 4
+VD E+ I QGG GC +G ++ +G + S S
Sbjct: 95 VVDSETFIVWLQGGPGCAG-TLGFFSENGPIEISQSSPS 132
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 24.2 bits (50), Expect = 8.0
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +3
Query: 258 NGVPDQLG--ALPTYPFPTGHVRSSHLCREGLPRAALCSGDHRTLASSPPT 404
N P Q G A+P+ P R+ R LPR R++++ PP+
Sbjct: 492 NRTPSQRGRVAVPSTPSVRSASRAMTSPRTPLPRVKNTQNPSRSISAEPPS 542
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 24.2 bits (50), Expect = 8.0
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +1
Query: 196 GQIVSSITASLRFDGALNVDLTEFQTNLVPYP 291
G ++ + L+ +G L +D +TN P P
Sbjct: 500 GSTITGVNRELQDEGRLEIDAKSSKTNTPPSP 531
>SPBC1347.09 |||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 284
Score = 24.2 bits (50), Expect = 8.0
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +1
Query: 304 PLVTYAPVISAEKAYHEQLSVAEITERLLRARQPDG 411
P T + AYH + E+T +L + +P+G
Sbjct: 146 PFSTEFDAVVCSMAYHHIKDLQEVTNKLSKLLKPNG 181
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 24.2 bits (50), Expect = 8.0
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 113 STMKPSMTSAAVTWILNARPTPTSIVLSARSYHRLPPLCVSTAPSMSI*RSSRPTW 280
ST S TS+ W A+P ++ + + + P +AP++S+ SS P W
Sbjct: 413 STSVSSSTSSPAPW---AKPASSAAPSNPAPWQQ--PAAPQSAPALSMNPSSLPPW 463
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 24.2 bits (50), Expect = 8.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 65 IEL*GSTTAVDTWGAG 18
IEL G+TTA D W G
Sbjct: 176 IELVGATTASDIWSVG 191
>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 2|||Manual
Length = 108
Score = 24.2 bits (50), Expect = 8.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 146 VTWILNARPTPTSIVLSARSYHRLPP 223
V W +RP S V+ AR H LPP
Sbjct: 67 VIWGTVSRPHGNSGVVRARFTHNLPP 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,677
Number of Sequences: 5004
Number of extensions: 37010
Number of successful extensions: 127
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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