Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F15
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.19 
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   4.1  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   4.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   9.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 0.19
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 171 LHQPQSSYRPDRIIDYRLSAFRRRPQCRSNGVPDQ 275
           LH  ++S +  +I+ Y  S  R++   + N +PD+
Sbjct: 164 LHMNRTSLKTSKIVSYPKSRSRKKGGLKDNLIPDK 198


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
 Frame = +3

Query: 57  QLYPYNPHH--PGTLRLCF 107
           QL PYNP H  PG   L +
Sbjct: 61  QLKPYNPEHKPPGPKDLVY 79


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
 Frame = +3

Query: 57  QLYPYNPHH--PGTLRLCF 107
           QL PYNP H  PG   L +
Sbjct: 62  QLKPYNPEHKPPGPKDLVY 80


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/38 (23%), Positives = 15/38 (39%)
 Frame = +2

Query: 95  PIVLSWSTMKPSMTSAAVTWILNARPTPTSIVLSARSY 208
           P +L W+     +      W++   P P+   L A  Y
Sbjct: 18  PRLLGWNVPAEELIHIPEHWLVYPEPNPSLHYLLALLY 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,876
Number of Sequences: 438
Number of extensions: 2833
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)