Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F15
(412 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 218 1e-57
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 218 1e-57
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 218 1e-57
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 218 1e-57
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 217 2e-57
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 217 2e-57
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 210 3e-55
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 130 4e-31
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 130 4e-31
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 128 1e-30
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 128 2e-30
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 128 2e-30
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 127 3e-30
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 126 4e-30
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 126 4e-30
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 126 6e-30
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 85 1e-17
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 85 2e-17
At1g03850.2 68414.m00367 glutaredoxin family protein contains IN... 29 1.2
At1g03850.1 68414.m00366 glutaredoxin family protein contains IN... 29 1.2
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)... 27 3.7
At4g30150.1 68417.m04287 expressed protein 27 3.7
At5g46650.1 68418.m05748 zinc finger (C3HC4-type RING finger) fa... 27 4.9
At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) near... 27 4.9
At3g53090.1 68416.m05851 HECT-domain-containing protein / ubiqui... 27 6.5
At5g44180.1 68418.m05406 homeobox transcription factor, putative... 26 8.6
At1g43610.1 68414.m05006 NLI interacting factor (NIF) family pro... 26 8.6
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 218 bits (533), Expect = 1e-57
Identities = 100/122 (81%), Positives = 113/122 (92%)
Frame = +1
Query: 13 IYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 192
IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRL
Sbjct: 171 IYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRL 230
Query: 193 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAE 372
I QI+SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVISA KAYHEQLSV E
Sbjct: 231 ISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPE 290
Query: 373 IT 378
IT
Sbjct: 291 IT 292
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 218 bits (533), Expect = 1e-57
Identities = 100/122 (81%), Positives = 113/122 (92%)
Frame = +1
Query: 13 IYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 192
IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRL
Sbjct: 171 IYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRL 230
Query: 193 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAE 372
I QI+SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVISA KAYHEQLSV E
Sbjct: 231 ISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPE 290
Query: 373 IT 378
IT
Sbjct: 291 IT 292
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 218 bits (532), Expect = 1e-57
Identities = 97/122 (79%), Positives = 116/122 (95%)
Frame = +1
Query: 13 IYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 192
+YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+L+IERPTYTNLNRL
Sbjct: 171 VYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTNLNRL 230
Query: 193 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAE 372
+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVAE
Sbjct: 231 VSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAE 290
Query: 373 IT 378
IT
Sbjct: 291 IT 292
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 218 bits (532), Expect = 1e-57
Identities = 97/122 (79%), Positives = 116/122 (95%)
Frame = +1
Query: 13 IYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 192
+YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+L+IERPTYTNLNRL
Sbjct: 171 VYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTNLNRL 230
Query: 193 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAE 372
+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVAE
Sbjct: 231 VSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAE 290
Query: 373 IT 378
IT
Sbjct: 291 IT 292
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 217 bits (531), Expect = 2e-57
Identities = 97/122 (79%), Positives = 115/122 (94%)
Frame = +1
Query: 13 IYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 192
+YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+L IERPTYTNLNRL
Sbjct: 171 VYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNLNRL 230
Query: 193 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAE 372
+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVAE
Sbjct: 231 VSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAE 290
Query: 373 IT 378
IT
Sbjct: 291 IT 292
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 217 bits (531), Expect = 2e-57
Identities = 97/122 (79%), Positives = 115/122 (94%)
Frame = +1
Query: 13 IYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 192
+YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+L IERPTYTNLNRL
Sbjct: 171 VYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNLNRL 230
Query: 193 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAE 372
+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVAE
Sbjct: 231 VSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAE 290
Query: 373 IT 378
IT
Sbjct: 291 IT 292
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 210 bits (513), Expect = 3e-55
Identities = 95/122 (77%), Positives = 110/122 (90%)
Frame = +1
Query: 13 IYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL 192
IYP+PQVSTAVVEPYNS+L+TH+ LEH+D ++DNEAIYDICRR+LDIERPTY+NLNRL
Sbjct: 171 IYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYSNLNRL 230
Query: 193 IGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAE 372
I Q +SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVIS+ KAYHEQ SV E
Sbjct: 231 ISQTISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSVPE 290
Query: 373 IT 378
IT
Sbjct: 291 IT 292
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 130 bits (314), Expect = 4e-31
Identities = 57/130 (43%), Positives = 88/130 (67%)
Frame = +1
Query: 10 AIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNR 189
+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + PT+ +LN
Sbjct: 168 SVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLANPTFGDLNH 227
Query: 190 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 369
LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + LSV
Sbjct: 228 LISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVP 287
Query: 370 EITERLLRAR 399
E+T+++ A+
Sbjct: 288 ELTQQMWDAK 297
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 130 bits (314), Expect = 4e-31
Identities = 57/130 (43%), Positives = 88/130 (67%)
Frame = +1
Query: 10 AIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNR 189
+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + PT+ +LN
Sbjct: 168 SVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLANPTFGDLNH 227
Query: 190 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 369
LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + LSV
Sbjct: 228 LISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVP 287
Query: 370 EITERLLRAR 399
E+T+++ A+
Sbjct: 288 ELTQQMWDAK 297
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 128 bits (310), Expect = 1e-30
Identities = 56/130 (43%), Positives = 89/130 (68%)
Frame = +1
Query: 10 AIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNR 189
+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN
Sbjct: 169 SVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNH 228
Query: 190 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 369
LI +S +T SLRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V
Sbjct: 229 LISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVP 288
Query: 370 EITERLLRAR 399
E+T+++ A+
Sbjct: 289 ELTQQMWDAK 298
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 128 bits (308), Expect = 2e-30
Identities = 55/130 (42%), Positives = 88/130 (67%)
Frame = +1
Query: 10 AIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNR 189
+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN
Sbjct: 168 SVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNH 227
Query: 190 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 369
LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V
Sbjct: 228 LISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRNLTVP 287
Query: 370 EITERLLRAR 399
E+T+++ A+
Sbjct: 288 ELTQQMWDAK 297
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 128 bits (308), Expect = 2e-30
Identities = 55/126 (43%), Positives = 87/126 (69%)
Frame = +1
Query: 10 AIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNR 189
+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN
Sbjct: 169 SVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNH 228
Query: 190 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 369
LI +S +T SLRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V
Sbjct: 229 LISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVP 288
Query: 370 EITERL 387
E+T+++
Sbjct: 289 ELTQQM 294
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 127 bits (306), Expect = 3e-30
Identities = 55/130 (42%), Positives = 88/130 (67%)
Frame = +1
Query: 10 AIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNR 189
+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN
Sbjct: 168 SVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNH 227
Query: 190 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 369
LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V
Sbjct: 228 LISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVP 287
Query: 370 EITERLLRAR 399
E+T+++ A+
Sbjct: 288 ELTQQMWDAK 297
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 126 bits (305), Expect = 4e-30
Identities = 54/126 (42%), Positives = 86/126 (68%)
Frame = +1
Query: 10 AIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNR 189
+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN
Sbjct: 168 SVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNH 227
Query: 190 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 369
LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V
Sbjct: 228 LISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVP 287
Query: 370 EITERL 387
E+T+++
Sbjct: 288 ELTQQM 293
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 126 bits (305), Expect = 4e-30
Identities = 54/126 (42%), Positives = 86/126 (68%)
Frame = +1
Query: 10 AIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNR 189
+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN
Sbjct: 168 SVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNH 227
Query: 190 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 369
LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V
Sbjct: 228 LISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVP 287
Query: 370 EITERL 387
E+T+++
Sbjct: 288 ELTQQM 293
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 126 bits (304), Expect = 6e-30
Identities = 54/126 (42%), Positives = 86/126 (68%)
Frame = +1
Query: 10 AIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNR 189
+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L + P++ +LN
Sbjct: 168 SVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNH 227
Query: 190 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 369
LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V
Sbjct: 228 LISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVP 287
Query: 370 EITERL 387
E+T+++
Sbjct: 288 ELTQQM 293
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 85.4 bits (202), Expect = 1e-17
Identities = 40/125 (32%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Frame = +1
Query: 28 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIV 207
+ S VV+PYNS+LT ++DC ++DN A+ I L + PT+ N L+ ++
Sbjct: 177 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLTNPTFAQTNSLVSTVM 236
Query: 208 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-ISAEKAYHEQLSVAEITER 384
S+ T +LR+ G +N DL +L+P PR HF + Y P+ + + + +V ++ R
Sbjct: 237 SASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRR 296
Query: 385 LLRAR 399
LL+ +
Sbjct: 297 LLQTK 301
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 85.0 bits (201), Expect = 2e-17
Identities = 40/125 (32%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Frame = +1
Query: 28 QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIV 207
+ S VV+PYNS+LT ++DC ++DN A+ I L + PT+ N L+ ++
Sbjct: 177 ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALGRIAVERLHLTNPTFAQTNSLVSTVM 236
Query: 208 SSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-ISAEKAYHEQLSVAEITER 384
S+ T +LR+ G +N DL +L+P PR HF + Y P+ + + + +V ++ R
Sbjct: 237 SASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRR 296
Query: 385 LLRAR 399
LL+ +
Sbjct: 297 LLQTK 301
>At1g03850.2 68414.m00367 glutaredoxin family protein contains
INTERPRO Domain IPR002109, Glutaredoxin
(thioltransferase)
Length = 150
Score = 29.1 bits (62), Expect = 1.2
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 122 KPSMTSAAVTWILNARPTPTSI 187
KPS +S++++W+ + P PTSI
Sbjct: 29 KPSSSSSSLSWLTSGSPKPTSI 50
>At1g03850.1 68414.m00366 glutaredoxin family protein contains
INTERPRO Domain IPR002109, Glutaredoxin
(thioltransferase)
Length = 159
Score = 29.1 bits (62), Expect = 1.2
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 122 KPSMTSAAVTWILNARPTPTSI 187
KPS +S++++W+ + P PTSI
Sbjct: 29 KPSSSSSSLSWLTSGSPKPTSI 50
>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
family protein similar to SP|P41972 Isoleucyl-tRNA
synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase)
(IleRS) {Staphylococcus aureus}; contains Pfam profile
PF00133: tRNA synthetases class I (I, L, M and V)
Length = 1093
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +2
Query: 110 WSTMKPSMTSAAVTWILNARPTPTSIVLSARSYHRLPPLCVSTAPSMSI*RSSRPTWC 283
W T KP++ A W + T+ + + + +P V+ +M+ SSR WC
Sbjct: 528 WRTKKPTIFRATEQWFASVEGFRTATMDAINNVKWVPHQAVNRISAMT---SSRSDWC 582
>At4g30150.1 68417.m04287 expressed protein
Length = 2009
Score = 27.5 bits (58), Expect = 3.7
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +1
Query: 34 STAVVEPYNSILTTHTTLEHSDCAFMVD-NEAIYDIC-RRNL--DIERPTYTNLNRLIGQ 201
S V+EP++ L TH T ++ C F+ E D+ NL D + +L RLI
Sbjct: 295 SCLVLEPFSRFLMTHPTTKNGFCDFLDKLFEPFMDVLGLLNLIEDKNKDLEISLLRLIED 354
Query: 202 IVS-SITASLRFDGALNV 252
I+S ++ S DG L +
Sbjct: 355 ILSLALFHSAHIDGFLGL 372
>At5g46650.1 68418.m05748 zinc finger (C3HC4-type RING finger)
family protein contains similarity to RING-H2 zinc
finger protein ATL6 [Arabidopsis thaliana] GI:4928403;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 289
Score = 27.1 bits (57), Expect = 4.9
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 64 ILTTHTTLEHSDCAFM-VDNEAIYDICRRNLDIERPTYTNLNRLIGQIV 207
+LTT + H +C +++ +CRRNLD P N+ LI +++
Sbjct: 130 LLTTCYHVFHQECIDQWLESNKTCPVCRRNLDPNAP--ENIKELIIEVI 176
>At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) nearly
identical to RelA/SpoT homolog RSH2 [Arabidopsis
thaliana] GI:7141306; contains Pfam profiles PF01966: HD
domain, PF04607: Region found in RelA / SpoT proteins
Length = 709
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 207 YDLADKTIEVGVGRAFNIQVTAADVIDGFIVDHESTIGVFQGGVGC 70
YD +D ++ +F + A ++ F DH+S I V G V C
Sbjct: 84 YDRSDDLKDLSFSSSFGY--SPAKFVNSFRRDHQSPISVLHGPVSC 127
>At3g53090.1 68416.m05851 HECT-domain-containing protein /
ubiquitin-transferase family protein / IQ
calmodulin-binding motif-containing protein contains
Pfam profiles PF00632: HECT-domain
(ubiquitin-transferase), PF00612: IQ calmodulin-binding
motif
Length = 1142
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 140 AAVTWILNARPTPTSIVLSARSYHRLPPLCVSTAPSM 250
A+ W+ R + I +AR++ LP V T PSM
Sbjct: 693 ASALWLSPGRTSRPPIAFAARTHEVLPTSDVLTTPSM 729
>At5g44180.1 68418.m05406 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7/homeotic
protein Hox7 (GI:19486) {Lycopersicon peruvianum};
similar to GP|4165087| Williams-Beuren syndrome deletion
transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
domain and Pfam PF00046: Homeobox domain
Length = 1694
Score = 26.2 bits (55), Expect = 8.6
Identities = 13/57 (22%), Positives = 32/57 (56%)
Frame = +1
Query: 109 MVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNL 279
++D+E +D ++LD+ ++L+ ++ +I +S +LR + A N + ++L
Sbjct: 1113 LIDSEEAFDYLVKSLDVRGVRESHLHFMLLKIEASFKEALRRNVAANPGVCSISSSL 1169
>At1g43610.1 68414.m05006 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 255
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -3
Query: 248 LRAPSKRREAVIDDT--IWPIRRLRLV*VGRSI 156
L A KRR ++DDT +WP + L+ + + I
Sbjct: 163 LLAADKRRVVIVDDTVHVWPFHKRNLLQITKYI 195
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,054,945
Number of Sequences: 28952
Number of extensions: 213698
Number of successful extensions: 629
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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