Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F14
         (233 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma...    24   3.1  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    23   5.4  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    22   9.4  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    22   9.4  

>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 434

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +1

Query: 172 GINVYKRKLKWK 207
           G+N+++R LKWK
Sbjct: 91  GLNLFQRSLKWK 102


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 231 FSMYSFVHFPLQFTLIYIYSAN 166
           F  YS  +FP   T I+IY+ +
Sbjct: 122 FYFYSLPNFPYSKTCIFIYTVS 143


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 15  EFKKFSFYK*LAGARGSARVSYV 83
           +FK+ SF   ++  RG   V+YV
Sbjct: 353 QFKQVSFVNNISTIRGGTHVNYV 375


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 148 YEYLVFISGINVYKRKLKWKMYKRIH 225
           ++YL     +NVYKR  + K    IH
Sbjct: 287 WKYLPTRQKMNVYKRNKRLKFQNYIH 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 744,626
Number of Sequences: 5004
Number of extensions: 8630
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)