Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F13
         (345 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6EMG0 Cluster: Putative uncharacterized protein; n=1; ...    30   9.2  

>UniRef50_A6EMG0 Cluster: Putative uncharacterized protein; n=1;
           unidentified eubacterium SCB49|Rep: Putative
           uncharacterized protein - unidentified eubacterium SCB49
          Length = 158

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 215 LHHYRFSLVTSHVLTKTLCLLHNIFRPS-LGVSCALHFTFIGF 340
           ++H++F L+TS +     C+L     P+ + ++  +H  F GF
Sbjct: 47  INHHQFKLITSEIGFGAFCVLEGTIEPNGVKITITIHKVFKGF 89


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 295,170,969
Number of Sequences: 1657284
Number of extensions: 4500415
Number of successful extensions: 9086
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 8508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9058
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 10703468375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)