Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F13
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    26   1.4  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    25   3.3  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   4.4  

>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 220 SLSVQSSNFSCTHKNFVFIT*YIQTIIRSLLCAPFYIHW 336
           ++   SS  SC   NF+ I       IR  L  P Y +W
Sbjct: 308 NIGTLSSTISCLDTNFLAIKDIFIACIRRSLAYPLYRNW 346


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 295 WSEYIM**TQSFCEYMRSY*TE 230
           W+EY++  TQS   Y+++Y +E
Sbjct: 229 WAEYVLRFTQSHLPYLQTYESE 250


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 148 SIKPVFISFYYTVIIKCHVM*KHKNDISCKAFKTEY 41
           S K V I FY+   I+C ++  H   I+   ++T++
Sbjct: 152 SSKKVVIHFYHPDFIRCKIIDSHLEKIAKVHWETKF 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,898
Number of Sequences: 5004
Number of extensions: 21539
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)