Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F13
         (345 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0098 - 12324664-12324822,12325430-12325543,12325649-123259...    27   3.0  
04_04_1357 + 32860677-32860781,32861484-32861588,32861678-328617...    26   6.9  

>08_02_0098 -
           12324664-12324822,12325430-12325543,12325649-12325921,
           12326124-12326354,12326444-12326594,12326680-12326759,
           12326839-12326913,12326992-12327093,12328000-12328121,
           12329726-12329791,12330158-12330201,12330850-12330898,
           12330967-12331087,12334631-12334735
          Length = 563

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 345 YVKPMNVKWSAQETPNDGLNILCNKHKVFV 256
           Y++P+  K    +T N+ LN + N+H  FV
Sbjct: 291 YIRPLQDKMKKSKTINNDLNPIWNEHYEFV 320


>04_04_1357 +
           32860677-32860781,32861484-32861588,32861678-32861728,
           32861829-32861949,32862495-32862616,32863032-32863133,
           32863226-32863300,32863391-32863470,32863601-32863751,
           32863850-32864080,32864221-32864517,32864638-32864751,
           32864857-32865030
          Length = 575

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 345 YVKPMNVKWSAQETPNDGLNILCNKHKVFV 256
           YV+P+  K    +T N+ LN + N+H  F+
Sbjct: 290 YVRPLPDKMKRSKTINNDLNPIWNEHFEFI 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,599,643
Number of Sequences: 37544
Number of extensions: 114514
Number of successful extensions: 207
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)