Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F13
         (345 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16807| Best HMM Match : ATP1G1_PLM_MAT8 (HMM E-Value=4)             28   2.3  
SB_43183| Best HMM Match : MethyltransfD12 (HMM E-Value=2)             26   9.4  
SB_6800| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.4  
SB_10938| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  
SB_9720| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.4  

>SB_16807| Best HMM Match : ATP1G1_PLM_MAT8 (HMM E-Value=4)
          Length = 84

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 198 LDNGPNFITIGSV**LLMYSQKLCVYYIIYSD-HH*ESLVRSIL 326
           LD G +FI       ++++S++LC + +  SD    ESL RS+L
Sbjct: 28  LDQGKHFIGSTEFIKIIVHSKRLCGFRVYVSDVEDEESLARSLL 71


>SB_43183| Best HMM Match : MethyltransfD12 (HMM E-Value=2)
          Length = 604

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 2   HEASDRHSYNARIILC 49
           ++ASDRHS+   IILC
Sbjct: 582 YQASDRHSFPKLIILC 597


>SB_6800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +2

Query: 8   ASDRHSYNARIILCFESFT*NIILVFLHDV--TFYNHGIIETNKHGFDRL-YKY 160
           +SDRHS++ R+   + S   N IL F      TF N   I +++H F R+ YKY
Sbjct: 59  SSDRHSFS-RVYYRYLS---NRILKFFASSFHTFENLRRISSDRHSFSRVYYKY 108


>SB_10938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 2   HEASDRHSYNARIILC 49
           ++ASDRHS+   IILC
Sbjct: 182 YQASDRHSFPKLIILC 197


>SB_9720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 2   HEASDRHSYNARIILC 49
           ++ASDRHS+   IILC
Sbjct: 110 YQASDRHSFPKLIILC 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,663,038
Number of Sequences: 59808
Number of extensions: 157353
Number of successful extensions: 343
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)