Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F13
         (345 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containi...    23   3.2  
EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            22   5.6  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    22   7.4  

>AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containing
           protein I protein.
          Length = 1340

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 287 FRPSLGVSCALHFT 328
           FRP L   CAL FT
Sbjct: 339 FRPGLPFKCALQFT 352


>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 218 HHYRFSLVTSHVLTKTLCL 274
           H Y+ S + +  LT+TLC+
Sbjct: 50  HEYQESTIGAAFLTQTLCI 68


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 230 FSLVTSHVLTKT 265
           FSL+  HV+TKT
Sbjct: 276 FSLLVGHVITKT 287


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 330,924
Number of Sequences: 2352
Number of extensions: 5854
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 24505155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)