Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F13
(345 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 22 2.3
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 22 2.3
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 22 2.3
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 22 2.3
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 22 2.3
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 22 2.3
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 22 2.3
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 22 2.3
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 22 2.3
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 22 2.3
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 22 2.3
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 21 5.4
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 20 9.5
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 20 9.5
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 20 9.5
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 20 9.5
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 20 9.5
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 2.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2
Query: 104 YNHGIIETNKHGFDRLY 154
YN+ NKH +++LY
Sbjct: 94 YNNNYNNYNKHNYNKLY 110
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 2.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2
Query: 104 YNHGIIETNKHGFDRLY 154
YN+ NKH +++LY
Sbjct: 94 YNNNYNNYNKHNYNKLY 110
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 2.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2
Query: 104 YNHGIIETNKHGFDRLY 154
YN+ NKH +++LY
Sbjct: 94 YNNNYNNYNKHNYNKLY 110
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 2.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2
Query: 104 YNHGIIETNKHGFDRLY 154
YN+ NKH +++LY
Sbjct: 94 YNNNYNNYNKHNYNKLY 110
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 2.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2
Query: 104 YNHGIIETNKHGFDRLY 154
YN+ NKH +++LY
Sbjct: 94 YNNNYNNYNKHNYNKLY 110
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 2.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2
Query: 104 YNHGIIETNKHGFDRLY 154
YN+ NKH +++LY
Sbjct: 94 YNNNYNNYNKHNYNKLY 110
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 2.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2
Query: 104 YNHGIIETNKHGFDRLY 154
YN+ NKH +++LY
Sbjct: 94 YNNNYNNYNKHNYNKLY 110
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 2.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2
Query: 104 YNHGIIETNKHGFDRLY 154
YN+ NKH +++LY
Sbjct: 94 YNNNYNNYNKHNYNKLY 110
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 2.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2
Query: 104 YNHGIIETNKHGFDRLY 154
YN+ NKH +++LY
Sbjct: 94 YNNNYNNYNKHNYNKLY 110
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.8 bits (44), Expect = 2.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2
Query: 104 YNHGIIETNKHGFDRLY 154
YN+ NKH +++LY
Sbjct: 327 YNNNYNNYNKHNYNKLY 343
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.8 bits (44), Expect = 2.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2
Query: 104 YNHGIIETNKHGFDRLY 154
YN+ NKH +++LY
Sbjct: 327 YNNNYNNYNKHNYNKLY 343
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 20.6 bits (41), Expect = 5.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 290 RPSLGVSCALHFTFIG 337
R SLG++ L TF+G
Sbjct: 245 RVSLGITTVLTMTFLG 260
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 19.8 bits (39), Expect = 9.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 260 KTLCLLHNIFRPSLGVSCALHFTF 331
KTL NI P +G+S TF
Sbjct: 243 KTLFYTVNIIIPCMGISFLTVLTF 266
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 19.8 bits (39), Expect = 9.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 260 KTLCLLHNIFRPSLGVSCALHFTF 331
KTL NI P +G+S TF
Sbjct: 243 KTLFYTVNIIIPCMGISFLTVLTF 266
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 19.8 bits (39), Expect = 9.5
Identities = 5/8 (62%), Positives = 7/8 (87%)
Frame = +1
Query: 319 PFYIHWLY 342
PF IHW++
Sbjct: 171 PFLIHWIW 178
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 19.8 bits (39), Expect = 9.5
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +2
Query: 266 LCLLHNIFRPSLGVSC 313
LCL I S G SC
Sbjct: 16 LCLASTILSESAGTSC 31
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 19.8 bits (39), Expect = 9.5
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 123 KLINTGLIDCTSIEKGDRERERER 194
+LI L+D + ++GD ++ ER
Sbjct: 677 RLIKRELVDAPADQEGDDDQVDER 700
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,719
Number of Sequences: 438
Number of extensions: 1469
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 7812315
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
- SilkBase 1999-2023 -