Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F12
(388 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 27 1.4
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 26 1.8
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 2.4
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 25 4.1
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|... 25 4.1
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual 25 5.5
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 24 7.2
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 24 9.6
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 24 9.6
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 24 9.6
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 24 9.6
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 26.6 bits (56), Expect = 1.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 154 PCFGFISKNLDWNAFVLNVALYPRQLIVFNVCI 56
P +GF L WN +A YP +LI ++C+
Sbjct: 158 PSWGF---TLGWNYLASFLATYPLELITASICL 187
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 26.2 bits (55), Expect = 1.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -1
Query: 274 IIDDLSQETVSSLQYHFYDSKLHITRHRKI*PNPT 170
++DD + ETV L+ + D++L+I K+ N T
Sbjct: 273 LLDDFTPETVQPLEENELDTELNIENEAKLFKNLT 307
>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 287
Score = 25.8 bits (54), Expect = 2.4
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -1
Query: 385 GSLTRMLHLRKDHGMRHIQEQLAVGNYLFPLCYHFPRIIDDLSQETVSSLQ 233
G T +L L KD + H+ + L + NY+ Y PR+ + ++ + LQ
Sbjct: 79 GRTTHVLKL-KDSAIIHLDQILNLSNYMHYALYCLPRLRHN-TERAIKELQ 127
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 25.0 bits (52), Expect = 4.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 375 QGCCIYEKIMACAISKSN 322
QGC + + I ACAISK +
Sbjct: 36 QGCFMNDTISACAISKEH 53
>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 521
Score = 25.0 bits (52), Expect = 4.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 170 SWVRLYLSVSCYMQFTIVKMI 232
+W+ + LS CY + TIV+ I
Sbjct: 422 NWINILLSYICYHRATIVQQI 442
>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 335 YPRATRGWKLPIPTLLSFSKNNR*SLTGDSL 243
+P+ T+ ++P TL S + NN LT L
Sbjct: 260 FPKKTKSTEIPFKTLPSLNINNERELTKHKL 290
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 24.2 bits (50), Expect = 7.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 151 CFGFISKNLDWNAFVLNV 98
C F S ++D+N F LN+
Sbjct: 712 CMSFFSPHMDFNTFNLNI 729
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 23.8 bits (49), Expect = 9.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 109 RMHSNLSFYL*IQNMAGAPLKLGSVISFCVVL 204
R HS S+Y ++ G+P K G V F V+
Sbjct: 478 RGHSRSSYYFEFGSIGGSPAKDGVVTFFTGVI 509
>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 23.8 bits (49), Expect = 9.6
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Frame = -1
Query: 388 PGSLTRMLHLRKD--HGMRHIQEQLAVGNYLFPLCYHFPRIIDDLSQETVSSLQYHFYDS 215
PGS L K +G+ ++ + ++ FP +DL +SL Y F
Sbjct: 356 PGSAIEFLDAFKGCYYGLEYLFKDRSLPKVHVHCFCRFPDPEEDLINRIYASLGYRFSPE 415
Query: 214 KLHITRHRKI*PN 176
++ RK+ PN
Sbjct: 416 EVDFYYVRKVAPN 428
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 23.8 bits (49), Expect = 9.6
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 82 DVDTTLHLERMHSNLSFYL*IQNMAGAPLKLGSVISFCVVLYAVYYRKN 228
D + HL R + +SF+L I GA L I FC Y + +N
Sbjct: 258 DTNFAAHLRRPWAGVSFFLGIYGALGAIL---PGILFCYQCYLISVGQN 303
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 23.8 bits (49), Expect = 9.6
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -1
Query: 181 PNPTSKERRPCFGFISKNLDWNAFVLNV 98
PNP + R G I L+WN L V
Sbjct: 1911 PNPNPEIRALSLGLIKVLLEWNDLQLKV 1938
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,626,998
Number of Sequences: 5004
Number of extensions: 32790
Number of successful extensions: 82
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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