Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F12
         (388 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0204 + 26354319-26356967                                         28   2.2  
03_02_1026 + 13313672-13313876,13341211-13342005,13363815-133638...    27   3.9  
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289...    27   3.9  
07_03_1117 - 24096425-24097853,24097894-24098336                       27   5.2  
03_06_0180 + 32175658-32178145,32178765-32178808                       26   9.1  

>05_06_0204 + 26354319-26356967
          Length = 882

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -1

Query: 130 NLDWNAFVLNVALYPRQLIVFNVCINL*CYN 38
           +++W + + +  L+PR L++ N  I+  C+N
Sbjct: 521 HIEWASQLFSSTLFPRNLVIINAMISGYCWN 551


>03_02_1026 +
           13313672-13313876,13341211-13342005,13363815-13363855,
           13363967-13364140
          Length = 404

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 289 YHFPRIIDDLSQETVSSLQYHFYDSKLHITRHRK 188
           +H  RI    S  T +  +  FY +KLHIT   K
Sbjct: 363 FHEERIFRSCSVYTTNGKEKGFYSNKLHITAETK 396


>01_06_0837 -
           32328191-32328369,32328682-32328731,32328844-32328923,
           32329193-32329345,32329505-32329654,32329877-32330000,
           32330086-32330198,32330287-32330420,32330566-32331232
          Length = 549

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 262 DHLLFLENDNKVGIGNFQPRVALGYG 339
           DH  FLE + + G G FQ R  +G G
Sbjct: 58  DHFSFLEEEGEEGDGFFQQRYLVGRG 83


>07_03_1117 - 24096425-24097853,24097894-24098336
          Length = 623

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 334 IQEQLAVGNYLFPLCYHFPRIIDDLSQETVSSLQYHFYDSKLHITRHRK 188
           I    ++  Y  P C  FP I++ L    VSS   HF  +  H T  R+
Sbjct: 576 ISRGASINQYKVPRCVTFPPIVELLDSRVVSS---HFSPALPHWTPARR 621


>03_06_0180 + 32175658-32178145,32178765-32178808
          Length = 843

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 172 LGSVISFCVVLYAVYYRKNDIGDLRLSPVRDHL 270
           + SV+S C  L A+YY K   G +   P+R  L
Sbjct: 553 ISSVLSACASLPAIYYGKEIHGVVIKGPIRADL 585


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,968,796
Number of Sequences: 37544
Number of extensions: 190721
Number of successful extensions: 361
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)