Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F12
         (388 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53603| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.11 
SB_7605| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.0  
SB_17214| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_50973| Best HMM Match : Oxysterol_BP (HMM E-Value=5.2e-09)          27   7.1  
SB_39878| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.3  
SB_15865| Best HMM Match : WD40 (HMM E-Value=1.2e-05)                  26   9.3  
SB_28909| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.3  

>SB_53603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +1

Query: 199 VLYAVYYRKNDIGDLRLSPVRDHLLFLENDNKVGIGNF-QPRVALGYGACHDLFVNATSL 375
           +L A YY+K    +  +  V D +L LE  ++  +    +PR+A+G+ A  DL +NA  L
Sbjct: 17  ILAAYYYKKAT--ERHVMSVLDGMLALEKRSRARLQQGPRPRIAIGFEATVDLSLNALEL 74

Query: 376 L 378
           L
Sbjct: 75  L 75


>SB_7605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 388 PGSLTRMLHLRKDHGMRHIQEQLAVGNYLFPLC 290
           P  LT   H+   H + H+ + L +GN  FPLC
Sbjct: 440 PWFLTMFCHVFPLHKIYHLWDTLLLGNSSFPLC 472


>SB_17214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 169 KLGSVISFCVVLYAVYYRKNDIGDLRLSPVRDHLLFLENDNKVGIGNF 312
           + G+++SFC        RK   G L+   VRD  L L    KV   N+
Sbjct: 311 EFGTMLSFCAGRKRSRRRKRQPGQLQYCYVRDESLDLVLSRKVNRDNY 358


>SB_50973| Best HMM Match : Oxysterol_BP (HMM E-Value=5.2e-09)
          Length = 529

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 286 HFPRIIDDLSQETVSSLQYHFYDSKLHITRHRKI*PNP 173
           HFPRI D L+ E        FY +  H+ R   +   P
Sbjct: 212 HFPRIADGLTAEDRILAVLEFYLTSFHVGRKGSLAKKP 249


>SB_39878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1052

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 376 TRMLHLRKDHGMRHIQEQLAV-GNYLFPLCYHFPRIIDDLSQETVSSLQYHFYDSK 212
           +RM++  + +   H QE   V   YL PL        DD+SQE  +S Q  FY  K
Sbjct: 330 SRMVNCFRGYLRNHPQEVFEVIAKYLEPL----KNPTDDVSQEVKASEQLFFYREK 381


>SB_15865| Best HMM Match : WD40 (HMM E-Value=1.2e-05)
          Length = 113

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 208 AVYYRKNDIGDLRLSPVR-DHLLFLENDNKVGIGN 309
           A ++RK +I DL+ SP +  +L    +DN V I N
Sbjct: 60  AFHHRKEEISDLKFSPGQGKYLAVASHDNFVDIYN 94


>SB_28909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 132 LLINPKHGRRSFEVGFGYI 188
           L  NP++  R+F VGFGYI
Sbjct: 766 LYSNPQYLHRTFIVGFGYI 784


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,810,979
Number of Sequences: 59808
Number of extensions: 230024
Number of successful extensions: 1166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)