Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F12
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51995-6|AAA96074.1|  430|Caenorhabditis elegans Hypothetical pr...    30   0.49 
AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical ...    29   1.1  
AL021473-2|CAA16304.1|  301|Caenorhabditis elegans Hypothetical ...    29   1.5  
AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical ...    28   2.6  
Z77133-6|CAB00869.1|  338|Caenorhabditis elegans Hypothetical pr...    27   3.5  
Z69794-6|CAA93683.1|  338|Caenorhabditis elegans Hypothetical pr...    27   3.5  
U00031-1|AAZ82851.1|  330|Caenorhabditis elegans Hypothetical pr...    26   8.1  
AC084152-6|AAK39316.1|  286|Caenorhabditis elegans Hypothetical ...    26   8.1  

>U51995-6|AAA96074.1|  430|Caenorhabditis elegans Hypothetical
           protein F07G6.3 protein.
          Length = 430

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -1

Query: 226 FYDSKLHITRHRKI*PN---PTSKERRPCFGFISKNLDWN 116
           F+D K+    + ++ P    PT   ++ C+G +S  LDWN
Sbjct: 321 FFDKKMKRRVNEEMRPRTDPPTDLSQQACYGTVSDTLDWN 360


>AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical
           protein Y67D8C.2 protein.
          Length = 460

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -1

Query: 226 FYDSKLHITRHRKI*PN---PTSKERRPCFGFISKNLDWN 116
           F+D K+    + ++ P    PT   ++ C+G +S  LDWN
Sbjct: 351 FFDKKMKRRVNEEMRPRTDPPTDLSQQACYGTVSDILDWN 390


>AL021473-2|CAA16304.1|  301|Caenorhabditis elegans Hypothetical
           protein Y20C6A.3 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -1

Query: 226 FYDSKLHITRHRKI*PN---PTSKERRPCFGFISKNLDWN 116
           F+D K+    + ++ P    PT   ++ C+G +S  LDWN
Sbjct: 192 FFDKKMKRRVNDEMRPRTDPPTDLSQQACYGTVSDMLDWN 231


>AF022967-5|AAB69878.1|  537|Caenorhabditis elegans Hypothetical
           protein C13A2.6 protein.
          Length = 537

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 388 PGSLTRMLHLRKDHGMRHIQEQLAVGNYLFPLCYHF 281
           P + T  L  RK+H   H   + + G ++ P  YHF
Sbjct: 488 PNADTCKLPQRKEHKCVHSDAEYSSGPHMIPFTYHF 523


>Z77133-6|CAB00869.1|  338|Caenorhabditis elegans Hypothetical
           protein R03G8.5 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 263 IIYYSWKMITKWE*VISNRELLLDMAHAMIF 355
           IIY  W M +K E  I N  ++L   H  +F
Sbjct: 211 IIYCGWSMYSKMEEKIKNYSIVLQKHHNQLF 241


>Z69794-6|CAA93683.1|  338|Caenorhabditis elegans Hypothetical
           protein R03G8.5 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 263 IIYYSWKMITKWE*VISNRELLLDMAHAMIF 355
           IIY  W M +K E  I N  ++L   H  +F
Sbjct: 211 IIYCGWSMYSKMEEKIKNYSIVLQKHHNQLF 241


>U00031-1|AAZ82851.1|  330|Caenorhabditis elegans Hypothetical
           protein B0361.4 protein.
          Length = 330

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -2

Query: 93  CIHVSSLFLMFVLIYNVIMIKHYKVK 16
           C+H ++  L+  L+Y +++IK Y ++
Sbjct: 198 CLHGANYSLLCSLVYEMVIIKEYGIR 223


>AC084152-6|AAK39316.1|  286|Caenorhabditis elegans Hypothetical
           protein Y102A11A.6 protein.
          Length = 286

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +1

Query: 163 PLKLGSVISFCVVLYAVYYRKNDIGDLRLSPVRDHLLFLENDNKVGIGNFQPRVALGYGA 342
           P  +G+VIS   VL+  +   NDI       +R    F+++  + G  + Q  V+  + A
Sbjct: 20  PTTVGAVISILCVLFISFMIFNDILAYIFIDLRSE-FFIDDPGREGKIDVQVNVSFPHMA 78

Query: 343 CHDLFVN 363
           C  L V+
Sbjct: 79  CEYLGVD 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,872,410
Number of Sequences: 27780
Number of extensions: 180167
Number of successful extensions: 448
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)