Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F12
         (388 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   1.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.6  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   2.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   6.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   6.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   6.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   8.6  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 8/40 (20%), Positives = 20/40 (50%)
 Frame = +2

Query: 179 RLYLSVSCYMQFTIVKMILET*DCLL*EIIYYSWKMITKW 298
           R++  ++C M+F +  M ++     +    Y+  K+  +W
Sbjct: 109 RMHAIIACQMEFQLYPMDIQICPIYIESFSYHKQKLRLRW 148


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 152 WPALL*SWVRLYLSVSCYMQFTI 220
           WP LL     L++++ C++ + I
Sbjct: 407 WPRLLRKRKELFIAIVCFVSYLI 429


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +2

Query: 152 WPALL*SWVRLYLSVSCYMQFTI 220
           WP LL     L++++ C++ + I
Sbjct: 460 WPRLLRKRKELFIAIVCFVSYLI 482


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 304 LFPLCYHFPRIIDDLSQETVSSLQYHFYD 218
           +F LC    R+I++ S    ++   H+YD
Sbjct: 170 VFMLCIFGNRLIEESSSVMEAAYSCHWYD 198


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 253 PVRDHLLFLENDNKVGIGNFQPRVALGYGACHDLF 357
           P+  HL  + +D +  +GN +    +G     D+F
Sbjct: 505 PLPQHLPRIHHDAEWKVGNHEDGYLIGVNNLIDIF 539


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 253 PVRDHLLFLENDNKVGIGNFQPRVALGYGACHDLF 357
           P+  HL  + +D +  +GN +    +G     D+F
Sbjct: 420 PLPQHLPRIHHDAEWKVGNHEDGYLIGVNNLIDIF 454


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 253 PVRDHLLFLENDNKVGIGNFQPRVALGYGACHDLF 357
           P+  HL  + +D +  +GN +    +G     D+F
Sbjct: 739 PLPQHLPRIHHDAEWKVGNHEDGYLIGVNNLIDIF 773


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 72  FLMFVLIYNVIMIKHYKVKA 13
           F   +L YN+++ +HY + +
Sbjct: 228 FTTDLLSYNILLRRHYSMNS 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,183
Number of Sequences: 438
Number of extensions: 2178
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)