Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F12
(388 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g56700.1 68416.m06307 male sterility protein, putative simila... 29 0.82
At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identica... 27 4.4
At5g48090.1 68418.m05941 expressed protein ; expression supporte... 27 5.8
At1g55350.4 68414.m06326 calpain-type cysteine protease family i... 27 5.8
At1g55350.3 68414.m06325 calpain-type cysteine protease family i... 27 5.8
At1g55350.2 68414.m06324 calpain-type cysteine protease family i... 27 5.8
At1g55350.1 68414.m06323 calpain-type cysteine protease family i... 27 5.8
At3g47790.1 68416.m05206 ABC transporter family protein contains... 26 7.6
At1g66460.1 68414.m07550 protein kinase family protein contains ... 26 7.6
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 29.5 bits (63), Expect = 0.82
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 232 YHFYDSKLHITRHRKI*PNPTSKERRPCFGFISKNLDWNAFVLNVAL 92
Y F+ ++ T + S E + FGF K +DW +++NV L
Sbjct: 468 YTFFQARFDNTNTTSL-IQEMSMEEKKTFGFDIKGIDWEHYIVNVHL 513
>At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identical
to male sterility protein 2 (MS2) SP:Q08891 (Arabidopsis
thaliana)
Length = 616
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -1
Query: 232 YHFYDSKLHITRHRKI*PNPTSKERRPCFGFISKNLDWNAFVLNV 98
Y FY + + +++ N + E+R FGF +++W ++ NV
Sbjct: 559 YTFYGGRFDNSNTQRLMENMSEDEKRE-FGFDVGSINWTDYITNV 602
>At5g48090.1 68418.m05941 expressed protein ; expression supported
by MPSS
Length = 636
Score = 26.6 bits (56), Expect = 5.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 172 LGSVISFCVVLYAVYYRKNDIGDLRLSPVRDHLLF 276
L + + V + + R ++I L L+P RDHL+F
Sbjct: 215 LTTAFLYIVSFHKLLNRAHEIDGLILTPARDHLVF 249
>At1g55350.4 68414.m06326 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 135 LINPKHGRRSFEVGFGYIFLCRVICSLLS 221
+IN H + FE GF + L V+CS+++
Sbjct: 643 IINSSH--QQFEFGFSVLLLSPVVCSIMA 669
>At1g55350.3 68414.m06325 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 135 LINPKHGRRSFEVGFGYIFLCRVICSLLS 221
+IN H + FE GF + L V+CS+++
Sbjct: 643 IINSSH--QQFEFGFSVLLLSPVVCSIMA 669
>At1g55350.2 68414.m06324 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 135 LINPKHGRRSFEVGFGYIFLCRVICSLLS 221
+IN H + FE GF + L V+CS+++
Sbjct: 643 IINSSH--QQFEFGFSVLLLSPVVCSIMA 669
>At1g55350.1 68414.m06323 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 135 LINPKHGRRSFEVGFGYIFLCRVICSLLS 221
+IN H + FE GF + L V+CS+++
Sbjct: 643 IINSSH--QQFEFGFSVLLLSPVVCSIMA 669
>At3g47790.1 68416.m05206 ABC transporter family protein contains
Pfam domain, PF00005: ABC transporter
Length = 901
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 151 CFGFISKNLDWNAFVLNVALYPRQLIVFNVCINL 50
CF + N F LN Y QL+ F +CINL
Sbjct: 379 CFAIFGSLIGLNFFRLND--YSIQLVFFFICINL 410
>At1g66460.1 68414.m07550 protein kinase family protein contains
Pfam profile: PF00069: Eukaryotic protein kinase domain
Length = 467
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 247 LSPVRDHLL-FLENDNKVGIGNFQPRVALGYGACHDLF 357
+SPV D L+ F + NF R LG GAC +F
Sbjct: 107 ISPVADSLIRFSYRELLTATRNFSKRRVLGRGACSYVF 144
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,257,633
Number of Sequences: 28952
Number of extensions: 162786
Number of successful extensions: 310
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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