Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F11
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0618 + 19998470-19998970,19999079-19999517,19999617-199998...    28   5.0  
05_01_0404 - 3185603-3185920,3186877-3186993,3187087-3187107           27   6.5  
07_03_0613 + 19959206-19959700,19960210-19960657,19960753-199609...    27   8.7  
06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089           27   8.7  
06_01_0776 - 5805555-5805639,5805769-5806008,5806103-5806173,580...    27   8.7  
03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594     27   8.7  

>07_03_0618 +
           19998470-19998970,19999079-19999517,19999617-19999804,
           19999944-20000264
          Length = 482

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 117 NSVSRLLVTWAVRKRLARVLQPVQGIFR 34
           + VSR+  TW V   + R + P+ G FR
Sbjct: 331 DDVSRMKYTWKVALEILRTISPIFGSFR 358


>05_01_0404 - 3185603-3185920,3186877-3186993,3187087-3187107
          Length = 151

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 13  AAGIRHEAKNALNWLENARQSLAHSPRHQQPTHTIHQIRQERQSFE 150
           A GIR+  K       + +Q   H P H Q     +Q +Q++Q  E
Sbjct: 51  ACGIRYRKKRRQELGLDKKQQQEHHPHHHQQQQQQYQRQQQQQQQE 96


>07_03_0613 +
           19959206-19959700,19960210-19960657,19960753-19960940,
           19961317-19961637
          Length = 483

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 117 NSVSRLLVTWAVRKRLARVLQPVQGIFR 34
           + VSR+  TW V     R + P+ G FR
Sbjct: 332 DDVSRMKYTWKVAMETVRTIPPIFGSFR 359


>06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089
          Length = 495

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
 Frame = -3

Query: 314 CCK*YVYSTSICSC---VCGVSLDAGAGSW 234
           CC  +V  +S CSC   VC  SLD     W
Sbjct: 363 CCACHVEESSSCSCAALVCSGSLDCDVKLW 392


>06_01_0776 -
           5805555-5805639,5805769-5806008,5806103-5806173,
           5806274-5806627
          Length = 249

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 127 GSDE*CESVAGDVGCAQETGARSPAS 50
           G D   ES  GD GC +E  A +P+S
Sbjct: 124 GEDHDEESSVGDSGCGRERSATTPSS 149


>03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594
          Length = 323

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 3   DPPGCRNSARGEKCPELAGERAPVSCAQPTSPATDSHYSSDPSGATEFR 149
           DP    ++ +   C EL G    V+ A+P     D+ Y S   G  E+R
Sbjct: 72  DPEAVDSAIKEMHCQELDGRTISVNKAEPKMNTDDTRYESG-GGRGEYR 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,514,022
Number of Sequences: 37544
Number of extensions: 193678
Number of successful extensions: 690
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)