Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F11
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L09634-1|AAA27967.1|  776|Caenorhabditis elegans Hypothetical pr...    39   0.002
Z70783-9|CAA94857.2|  455|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z81519-5|CAI46603.1|  590|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z81519-4|CAB04218.1|  592|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U42436-6|AAM15564.1|  615|Caenorhabditis elegans Not-like (yeast...    28   4.5  
U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast...    28   4.5  
AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical...    27   7.8  

>L09634-1|AAA27967.1|  776|Caenorhabditis elegans Hypothetical
           protein C30C11.4 protein.
          Length = 776

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = +1

Query: 52  WLENARQSLAHSPRHQQPTHTIHQIRQERQSFESVVNPILXXXXXXXXXXXXXXXXAGDG 231
           WL+ AR       +   P     +I Q +  FE+VVNPIL                A   
Sbjct: 703 WLDEARHKQETRSKTDAPVVFTEEILQNKNVFENVVNPIL--------NKKKPAAPAPPK 754

Query: 232 HHEPAPASNDTPQTQE-QMDVE 294
             EP PA+ D PQ+Q  +MDV+
Sbjct: 755 KEEPQPAAGDQPQSQPGEMDVD 776


>Z70783-9|CAA94857.2|  455|Caenorhabditis elegans Hypothetical
           protein ZK856.9 protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = -2

Query: 465 VTSVNICNFQTYDQIKIYGKTLIIINKKIHPAENELNVETKFNLYKCLNYLL*VVCLFNV 286
           +TS  + N+ + +  K     +    +KI   EN+ NVE + ++   ++  L  VCL N 
Sbjct: 35  ITSEFLVNYPSSEDEKSPEDVIKAYKRKI---ENQKNVENEESVIPAIDPKLCKVCLKNE 91

Query: 285 HLFLCLWC 262
           H + C  C
Sbjct: 92  HKYKCPRC 99


>AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical
           protein F19B2.6 protein.
          Length = 807

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 154 HSRNSVAPDGSDE*CESVAGDVGCAQETGARSPASSGHFSPRAE 23
           H+  S +  G+ +  +++AG  GC  +     PA SG+  P+A+
Sbjct: 381 HNCQSDSQQGTSQNRDNLAGMKGCCVKDQYHEPAPSGYHPPQAQ 424


>Z81519-5|CAI46603.1|  590|Caenorhabditis elegans Hypothetical
           protein F29C12.1b protein.
          Length = 590

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 109 ESVAGDVGCAQETGARSPASSGHFSPRAEFLQPGGS 2
           + + G  G A   GA+S + +  F+P  +FLQP  +
Sbjct: 238 QGLFGAPGAAGAAGAQSQSQAAAFNPFQQFLQPNAA 273


>Z81519-4|CAB04218.1|  592|Caenorhabditis elegans Hypothetical
           protein F29C12.1a protein.
          Length = 592

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 109 ESVAGDVGCAQETGARSPASSGHFSPRAEFLQPGGS 2
           + + G  G A   GA+S + +  F+P  +FLQP  +
Sbjct: 240 QGLFGAPGAAGAAGAQSQSQAAAFNPFQQFLQPNAA 275


>U42436-6|AAM15564.1|  615|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform b protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 37  KNALNWLENARQSLAHSPRHQQPTHTIHQIRQERQSFESVVNPI 168
           K     L   RQS    P+H Q +H  H ++Q +    S ++ +
Sbjct: 341 KQLFGQLPEQRQSTQQHPQHLQSSHQQHPLQQNQDQHHSFLHQL 384


>U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform a protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 37  KNALNWLENARQSLAHSPRHQQPTHTIHQIRQERQSFESVVNPI 168
           K     L   RQS    P+H Q +H  H ++Q +    S ++ +
Sbjct: 522 KQLFGQLPEQRQSTQQHPQHLQSSHQQHPLQQNQDQHHSFLHQL 565


>AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37D8A.26 protein.
          Length = 88

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 336 LYKCLNYLL*VVCLFNVHLFLCLWC 262
           ++  LN+ L + CLF     +C WC
Sbjct: 41  VFGMLNFALFITCLFLPCFIVCFWC 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,893,695
Number of Sequences: 27780
Number of extensions: 174083
Number of successful extensions: 643
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)