Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F11
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.0  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   1.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   1.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.6  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              21   7.3  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +1

Query: 7   PRAAGIRHEAKNALNWLENARQSLAHSPRHQQPTHTIHQIRQERQ 141
           P  A     A  + +WL NA   +       QP H ++   Q++Q
Sbjct: 73  PGMAAAGKGAARSDDWLANANSPVGSPSAALQPQHVVYGNPQQQQ 117


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +2

Query: 263 HHKHKNRWTLNKHTTYNK*FKHLYKLNLVS 352
           ++ + N +  N +  YN  +K LYK  +++
Sbjct: 94  YNNYNNNYNNNYNNNYNNNYKKLYKNYIIN 123


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +2

Query: 263 HHKHKNRWTLNKHTTYNK*FKHLYKLNLVS 352
           ++ + N +  N +  YN  +K LYK  +++
Sbjct: 94  YNNYNNNYNNNYNNNYNNNYKKLYKNYIIN 123


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 489 FYNNNTKIVTSVNICNFQTYDQIKIYGKTLI 397
           F  N T     +++C+ QTY  +++  K  I
Sbjct: 563 FEQNTTDQSMDIDVCDNQTYTSLQMAMKNPI 593


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = -2

Query: 498 IVHFYNNNTKIVTSVNICNFQTYDQIKIYGKTLIIINKKIHPAENELN 355
           I+   N   ++ +   I  F  YD    + + ++    +I+  ENE+N
Sbjct: 51  IIDVENEKVQLFSECLIKKFNAYDDGGNFNEVVVREIAEIYLDENEVN 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,453
Number of Sequences: 438
Number of extensions: 2362
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)