Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F10
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   2.0  
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi...    25   4.6  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   4.6  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   6.1  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    25   8.1  

>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 101 TLHRYYIFCSNVIRDRTYK 45
           TLH  YIF S + RD TY+
Sbjct: 277 TLHARYIFASFISRDTTYQ 295


>SPBC21H7.07c |his5||imidazoleglycerol phosphate
           dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 360 IKRESTLNTLLRQLIPHYFKV*YTYKTCYAVIHFITCQLHTYPHHNARS 214
           +KRE  +  L  ++IPH     Y++     +   +TC   +  HH A S
Sbjct: 144 LKREK-VGELSCEMIPHLL---YSFSVAAGITLHVTCLYGSNDHHRAES 188


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 268  HSITCFICILYFKIMWY 318
            H IT F+ I+ F++ WY
Sbjct: 1682 HGITVFMFIIVFEVSWY 1698


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 83  IFCSNVIRDRTYKAWR*TW 27
           IFCSN   + T K W+  W
Sbjct: 377 IFCSNTNNNSTNKLWKIRW 395


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 294 YTYKTCYAVIHFITC 250
           Y+++TC A +H+I C
Sbjct: 507 YSFETCSAFLHYIYC 521


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,972
Number of Sequences: 5004
Number of extensions: 32180
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)