Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F10
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791...    28   4.6  

>03_05_0968 +
           29277122-29277445,29278389-29278505,29278957-29279114,
           29279678-29279727,29279968-29280161,29280867-29281049,
           29281152-29281270,29281383-29281522,29281857-29281937,
           29282286-29282389
          Length = 489

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 247 ATHLSTSQCAIIRFK*GGETTPFLVVDDCL 158
           + HL     A+I+   GG TT FL +D CL
Sbjct: 306 SAHLHCKFPAVIQHGEGGPTTKFLALDKCL 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,165,357
Number of Sequences: 37544
Number of extensions: 173900
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)