Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F10
         (488 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65460.1 68418.m08232 kinesin motor protein-related contains ...    27   5.1  
At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin...    27   9.0  

>At5g65460.1 68418.m08232 kinesin motor protein-related contains
            similarity to kinesin heavy chain
          Length = 1281

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 265  SLYHVSATHLSTSQCAIIRFK*GGETTPFLV 173
            S+  +S+T    SQ  +++F  GG + PF++
Sbjct: 1147 SIDSISSTETDVSQWNVLQFNTGGSSAPFII 1177


>At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin
           motor protein - Ustilago maydis, PID:g2062750; identical
           to cDNA   MKRP2 mRNA for kinesin-related protein
           GI:16902293, kinesin-related protein [Arabidopsis
           thaliana] GI:16902294
          Length = 1055

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 94  TAIIYFVQTSSGIEHTKHGDKHGP 23
           T   Y V TSSG  HT HGD+  P
Sbjct: 173 TVFAYGV-TSSGKTHTMHGDQESP 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,333,112
Number of Sequences: 28952
Number of extensions: 152715
Number of successful extensions: 238
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)