Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F09
         (340 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768           26   8.7  
06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835           26   8.7  
06_01_1088 - 8926361-8927301,8927437-8927705,8927850-8929023,892...    26   8.7  

>12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768
          Length = 1004

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 289 LKQDANGVNISNLRLQRNFRFIY 221
           LK   NGVN+S+LRL+   + IY
Sbjct: 279 LKSYPNGVNLSDLRLELKKKNIY 301


>06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835
          Length = 1091

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 91  LWQTPHSFSQVPSGLKLEFHFLPLHL 14
           LW+ PH  +++   L+L + +LP  L
Sbjct: 450 LWELPHRDNEILPALQLSYLYLPQEL 475


>06_01_1088 -
           8926361-8927301,8927437-8927705,8927850-8929023,
           8929132-8929399
          Length = 883

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 91  LWQTPHSFSQVPSGLKLEFHFLPLHL 14
           LW+ PH  +++   L+L + +LP  L
Sbjct: 411 LWELPHRENEILPALQLSYLYLPQEL 436


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,122,449
Number of Sequences: 37544
Number of extensions: 104885
Number of successful extensions: 196
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)