Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F09
         (340 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132952-12|CAB63385.1|  131|Caenorhabditis elegans Hypothetical...    27   4.5  
AY669392-1|AAU05397.1|  158|Caenorhabditis elegans truncated aro...    26   7.9  
AY669391-1|AAU05396.1|  158|Caenorhabditis elegans truncated aro...    26   7.9  

>AL132952-12|CAB63385.1|  131|Caenorhabditis elegans Hypothetical
           protein Y51H4A.21 protein.
          Length = 131

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 152 KCNKVIYFLFYFFS 193
           KC K+IYFLF  FS
Sbjct: 106 KCKKIIYFLFICFS 119


>AY669392-1|AAU05397.1|  158|Caenorhabditis elegans truncated
           aromatic L-amino aciddecarboxylase protein.
          Length = 158

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 100 PVTLWQTPHSFSQVPSGL 47
           P T W  PH F+  P+GL
Sbjct: 67  PATHWNHPHFFAYFPAGL 84


>AY669391-1|AAU05396.1|  158|Caenorhabditis elegans truncated
           aromatic L-amino aciddecarboxylase protein.
          Length = 158

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 100 PVTLWQTPHSFSQVPSGL 47
           P T W  PH F+  P+GL
Sbjct: 67  PATHWNHPHFFAYFPAGL 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,503,356
Number of Sequences: 27780
Number of extensions: 107709
Number of successful extensions: 293
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)