Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F09
         (340 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57630.2 68416.m06421 exostosin family protein contains Pfam ...    25   9.7  
At3g17740.1 68416.m02264 expressed protein                             25   9.7  

>At3g57630.2 68416.m06421 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 791

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 12  ERCNGKK*NSSFKPDGTCENE*GVCQRVTGMSDNSDNNFRID 137
           E   G+K  S     G C +E G+C+   G +D S    R+D
Sbjct: 114 EPIGGRKCMSDCSGQGVCNHEFGLCRCFHGFTDCS-QKLRLD 154


>At3g17740.1 68416.m02264 expressed protein
          Length = 1149

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 109  SDIPVTLWQTPHSFSQVPSGLKLEFHFLPLHLSYLV 2
            +D+P  L    H FS V  G K + H L L  +Y V
Sbjct: 934  NDLPGALEILEHMFSSVLPGRKSQSHQLELLFNYYV 969


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,965,621
Number of Sequences: 28952
Number of extensions: 92580
Number of successful extensions: 209
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)