Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F08
(399 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe... 28 0.46
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 27 0.81
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 27 1.4
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp... 26 1.9
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 26 2.5
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 3.3
SPAC12G12.08 |mrpl6||mitochondrial ribosomal protein subunit L16... 25 4.3
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 25 4.3
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 25 4.3
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.7
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 5.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 5.7
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 24 7.6
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 24 7.6
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 24 10.0
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 24 10.0
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 24 10.0
>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 405
Score = 28.3 bits (60), Expect = 0.46
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 7 NSGRGKIAVKWRKGLHRAR 63
NSG +IA+ W GLH A+
Sbjct: 122 NSGNAEIAINWAGGLHHAK 140
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 27.5 bits (58), Expect = 0.81
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 18 RENRRKMAKRIAQSSINWAALAERVPAEQKVHL 116
R NRR++ + +A+S NW R A++ ++L
Sbjct: 903 RRNRRRLEQELAKSQKNWERRRARHAAKEGINL 935
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 26.6 bits (56), Expect = 1.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 333 IESFIKESNNNISSYPTEINAI 398
I SF+ +N N SSYP +N +
Sbjct: 236 IMSFLLSNNTNTSSYPFSVNGV 257
>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 26.2 bits (55), Expect = 1.9
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 156 VLANPP--EPPKINWALYKQSVPIPGMVDTFQKQYEALNIPYP 278
+L +PP + KINWAL PIP T + ++ +N+ P
Sbjct: 227 LLNSPPILQSSKINWALENTLTPIP---TTMELVFDDINLIIP 266
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 2.5
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +3
Query: 261 LNIPYPADTQTKQIEAQWAQIKTAIESFIKESNNNISSYPTEIN 392
L + P + + +I++ ++ FIK SN S+Y + N
Sbjct: 94 LQVVEPLEESKSSMSFVTRRIQSMLQDFIKSSNGGFSNYGSSAN 137
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 25.4 bits (53), Expect = 3.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 318 QIKTAIESFIKESNNNISS 374
+I+ ++ESF K SN N+SS
Sbjct: 266 EIENSLESFRKHSNGNLSS 284
>SPAC12G12.08 |mrpl6||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 213
Score = 25.0 bits (52), Expect = 4.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 341 AFDSCLDLCPLSFDLLRLGV 282
+ DSCL PL+F + RLG+
Sbjct: 3 SIDSCLKTRPLTFRIARLGM 22
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 4.3
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = +3
Query: 27 RRKMAKRIAQSSINWAALAERVPAEQKVHLAAFKIRSDSYLRRVLANPPEPPKINWAL 200
R A R I WA+L + + + SDSYL L NP K + A+
Sbjct: 302 RSVSAMRNTFQLIKWASLLKYPLVPELTPAVVENLDSDSYLAIALINPTSQVKASKAI 359
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 25.0 bits (52), Expect = 4.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 206 AIRAHSWHGRHFPE 247
A+R W+G HFPE
Sbjct: 181 AMRVREWYGWHFPE 194
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 24.6 bits (51), Expect = 5.7
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Frame = +1
Query: 94 QQNRRCT*RHLKLDPTLTFEGFWRIHRSHRRSIGLFTSNPCPFLAW*TLSRNSMKR*IFL 273
QQN +C+ L P T+ + HR + ++ + C F R +
Sbjct: 1682 QQNEKCSIYPLAFSPRFTYYRHTKCHRRNEKNEKEIIPDTCRF------GDEFTHRCLMP 1735
Query: 274 TLPTPRRSKSKLNGHKSRQLSK-ASSRNRIITFLPIQLKS 390
+ P+ + +L + ++L + SS I FL QL+S
Sbjct: 1736 SRENPKAVQYELLQKRRKELEEFMSSEQERIGFLKSQLES 1775
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 24.6 bits (51), Expect = 5.7
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 267 IPYPADTQTKQIEAQWAQIKTAIESFIKESNNNISSYPTEI 389
I Y ++++ A+W +I+ A+ S K S + +PT++
Sbjct: 99 INYLLARKSQKSAAEWEEIERALLSCCKRSKDPSILFPTDV 139
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.6 bits (51), Expect = 5.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 146 PSKGFGESTGATEDQLGSLQAIRAHSWHGRHFPET 250
P K GE + ED+ ++ HS + H PE+
Sbjct: 353 PGKSQGEISEQEEDEYDDAESDEMHSPYSTHEPES 387
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 24.2 bits (50), Expect = 7.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 180 PKINWALYKQSVPIPG 227
P+ NWAL +P+PG
Sbjct: 126 PEGNWALRVHGIPLPG 141
>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 24.2 bits (50), Expect = 7.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 217 PFLAW*TLSRNSMKR*IFLTLPTPRRSKSKLNGHKSRQLSKASSRN 354
PFL+ + +S K ++ TLP P + +RQL+ +S +N
Sbjct: 44 PFLSLPDGAHSSEKDFVYFTLPFPNDEGTVFGLSCTRQLNASSLKN 89
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 23.8 bits (49), Expect = 10.0
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +1
Query: 271 LTLPTPRRSKSKLNGHKSRQLSKASSRNRIITFL 372
+++P P + N + L +SS N + TFL
Sbjct: 374 ISIPNPFQGVESANSDAANNLGSSSSLNLVDTFL 407
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 23.8 bits (49), Expect = 10.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 192 WALYKQSVPIPGMVDTFQKQYEALNIPY 275
WA + ++P P + TF K+++A I Y
Sbjct: 315 WAHEQWNLPYPPDMVTFSKKFQAAGIFY 342
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 23.8 bits (49), Expect = 10.0
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +3
Query: 90 VPAEQKVHLAAFKIRSDSYLRRVLANP---PEPPKINWALYKQSVPIPGMVDTFQKQYEA 260
+P+ V L + K + + + R + P P P N L VP+ + +
Sbjct: 612 IPSSLNVSLESSK-KPEIFHERHIPTPETGPNKPSKNNILKSTQVPVTPKQKSSTANKGS 670
Query: 261 LNIPYPADTQTKQIEAQWAQI 323
+ P P +++K+ + W ++
Sbjct: 671 TSSPSPPSSESKKTKRSWGRL 691
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,185
Number of Sequences: 5004
Number of extensions: 40145
Number of successful extensions: 121
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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