Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F08
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0696 + 5071555-5071922,5072252-5072333,5073969-5074070,507... 29 1.0
02_04_0172 - 20595357-20596129,20596994-20597138 27 5.5
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 27 7.2
06_03_1108 - 27661916-27662812,27662889-27663529,27663613-276645... 27 7.2
11_07_0014 + 27379941-27379974,27381975-27382033,27382561-273827... 26 9.5
09_02_0267 - 6485428-6485895,6488255-6488303,6488466-6488469,648... 26 9.5
08_02_1101 - 24308433-24308978,24309195-24309364,24309443-243095... 26 9.5
08_01_0833 + 8113327-8113449,8113797-8114020,8115361-8115437,811... 26 9.5
06_02_0170 + 12551040-12551209,12551297-12551362,12552438-125525... 26 9.5
05_06_0022 + 24988363-24988453,24989102-24989325,24989433-249894... 26 9.5
>06_01_0696 +
5071555-5071922,5072252-5072333,5073969-5074070,
5074191-5074247,5074576-5074719,5075175-5075245,
5075363-5075468
Length = 309
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 100 SAGTLSARAAQFIELCAILFAILRRFS 20
SA LS + FI LC +LF LR+FS
Sbjct: 27 SAAALSLAGSSFIVLCYLLFRELRKFS 53
>02_04_0172 - 20595357-20596129,20596994-20597138
Length = 305
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/17 (52%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Frame = -1
Query: 249 VSGKC-LPCQEWARIAC 202
+ G C LPC++W R+AC
Sbjct: 45 LGGGCSLPCRQWGRLAC 61
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 243 QKQYEALNIPYPADTQTKQIEAQWAQIKTA-IESFIKESNNNISSYPTEI 389
Q + E ++ P D TK+ E WA+ A + IK+ N+ +S EI
Sbjct: 258 QSEQELMSFSVPCDMSTKRDEEPWAKSFLAHMNEKIKQCNHVWASVRMEI 307
>06_03_1108 -
27661916-27662812,27662889-27663529,27663613-27664592,
27664854-27664934,27668582-27668634,27669294-27669308,
27670069-27670296
Length = 964
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -2
Query: 359 IRFLDEAFDSCLDLCPLSFDLLRLGVGRV-RNIQRFILFLESVYHARNGHGLLVKSPIDL 183
I ++D D LD D +R V R+ RN Q+F++ ++ + +G V+
Sbjct: 411 IDYMDAYKDFTLDPVNFPADRMRPFVDRLHRNGQKFVVIIDPGINVNTTYGTFVRGMKQD 470
Query: 182 RWLRWIRQN 156
+L+W N
Sbjct: 471 IFLKWNGSN 479
>11_07_0014 +
27379941-27379974,27381975-27382033,27382561-27382782,
27383727-27383810,27385054-27385131,27385716-27385832,
27385956-27386019,27386399-27386402,27386565-27386613,
27388973-27389440
Length = 392
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +3
Query: 132 RSDSYLRRVLANPPEPPKINWALYKQSVP-IPGMVDTFQ 245
R S RV AN PP + W L + P P + + FQ
Sbjct: 212 RDPSLSYRVSANSTVPPTLTWELQSTATPKAPKVKEQFQ 250
>09_02_0267 -
6485428-6485895,6488255-6488303,6488466-6488469,
6488849-6488912,6489036-6489152,6489737-6489814,
6491058-6491141,6492086-6492307,6492835-6492893,
6494894-6494927
Length = 392
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +3
Query: 132 RSDSYLRRVLANPPEPPKINWALYKQSVP-IPGMVDTFQ 245
R S RV AN PP + W L + P P + + FQ
Sbjct: 212 RDPSLSYRVSANSTVPPTLTWELQSTATPKAPKVKEQFQ 250
>08_02_1101 -
24308433-24308978,24309195-24309364,24309443-24309542,
24310337-24310500,24310960-24310996,24311222-24311262,
24313877-24314093
Length = 424
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +2
Query: 215 AHSWHGRHF----PETV*SVEYSLPCRHPDEAN 301
A W GR P T + +LPCR PDEA+
Sbjct: 68 AEEWEGRSSSVDCPVTPRKMYGNLPCREPDEAD 100
>08_01_0833 +
8113327-8113449,8113797-8114020,8115361-8115437,
8115516-8115600,8115695-8115812,8116516-8116887
Length = 332
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -1
Query: 237 CLPCQEWARIACKEPN*SSVAPVDSPKPFEG 145
CLPC + +++C P+DS K G
Sbjct: 225 CLPCHTYGKLSCGNVRQQPNRPLDSEKQLIG 255
>06_02_0170 +
12551040-12551209,12551297-12551362,12552438-12552504,
12552588-12552656,12552771-12552911,12553202-12553330,
12554002-12554088,12554664-12554738,12554839-12554916,
12555014-12555091,12555173-12555235,12555341-12555415
Length = 365
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +3
Query: 210 SVPIPGMVDTFQKQYEALNIPY--PADTQTK--QIEAQWAQI-KTAIESFIKESNNN 365
SVP P + + Y A IPY +D K +E QW + ++ SF + + N+
Sbjct: 7 SVPFPLLQAPVESTYRACTIPYRFASDNPRKATPVEIQWIDLFLNSVPSFRQRAEND 63
>05_06_0022 +
24988363-24988453,24989102-24989325,24989433-24989494,
24990219-24990440,24990740-24990869,24991373-24991698,
24991910-24992051,24992169-24992414
Length = 480
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 335 DSCLDLCPLSFDLLRLGVGRVRNIQRF 255
D C LC L++D LR G NI F
Sbjct: 40 DECPHLCTLAYDYLRKNKGYEENIFAF 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,729,611
Number of Sequences: 37544
Number of extensions: 297371
Number of successful extensions: 768
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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