Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F08
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13064| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.60 
SB_7161| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.00072)        28   3.2  
SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)                   28   3.2  
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)              28   3.2  
SB_52650| Best HMM Match : DUF229 (HMM E-Value=0.6)                    27   4.3  
SB_27095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_13104| Best HMM Match : Peptidase_C13 (HMM E-Value=1.5e-12)         26   9.8  

>SB_13064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +3

Query: 66  NWAALAERVPAEQKVHLAAFKIRSDSYLRRVLANPPEPPKINW--ALYKQSVPIPGM 230
           NW         EQ+ +L  F+   + Y R +   PP+   + W    Y Q + IPG+
Sbjct: 174 NWMGFVNCARNEQEQNLEVFQYGGNIYYRAIKDVPPDQELLVWYGGTYMQFLGIPGI 230


>SB_7161| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.00072)
          Length = 263

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 294 SSGCRQGKEYSTLHTVSGKCLPCQEWARIAC 202
           S+GC     Y  LH V  K  PC ++ + AC
Sbjct: 62  SAGCLDAAHYM-LHAVDNKSEPCNDFFQYAC 91


>SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)
          Length = 1277

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 5   GILAEGKSP*NGEKDCTELDKLGCP-CRKGASRTEGALSG 121
           G+++ G    +G  DC +L +  CP CR    R E  L+G
Sbjct: 854 GLISNGDDAESGCCDCGDLGEHTCPVCRSCGKRVERELNG 893


>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 751

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 143 LPSKGFGESTGATEDQLGSLQAIRAHSWHGRH 238
           +P  G G +   TED +    AI   SW  RH
Sbjct: 459 VPLDGCGTAHNVTEDSIVYYNAIEGESWEERH 490


>SB_52650| Best HMM Match : DUF229 (HMM E-Value=0.6)
          Length = 558

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 154 LRR*ESDLILNAAKCTFCSAGTLSARAAQFIELCAI 47
           LR   +D+I+ A KC FC+      R   F E+  I
Sbjct: 335 LRLQRADVIMYARKCRFCTVALSVCRLGTFKEIIVI 370


>SB_27095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +3

Query: 180 PKINWALYKQSVPIPGMVDTFQKQYEALNIPYPADTQTKQIEAQWAQIKTAIESFIKES 356
           PK+ +  Y   + I G+V  F    E   + Y  + Q K+  A+   ++ A E+ + E+
Sbjct: 308 PKVTYTKYSDWILITGLVYVFGALVEYAVVNYFDNAQAKKNVAKAVDVENAKETELPET 366


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +3

Query: 186  INWALYKQSVPIPGMVDTFQKQYEALNIPYPADTQTKQIEAQWAQIKTAIESFIKESNNN 365
            +  A  +  V +  + D F   Y+A++ P    T T   E Q  +IK A+   + E   +
Sbjct: 3002 VEQAAEEYHVTVAHVEDVFASAYDAVDAPAVFGTDTDHAEEQLHKIK-ALRDHLNEKQGD 3060

Query: 366  I 368
            +
Sbjct: 3061 V 3061


>SB_13104| Best HMM Match : Peptidase_C13 (HMM E-Value=1.5e-12)
          Length = 281

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 78  LAERVPAEQKVHLAAFKIRSDSYLRRVLANPPEPPKINWALYKQSV 215
           + E++ A  K  +A+  I SDS + RVL    EP  +N+  Y+ ++
Sbjct: 144 MREKIKATVK-QIASHVIASDSQMNRVLMRSAEP--VNYNCYEAAI 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,081,188
Number of Sequences: 59808
Number of extensions: 306115
Number of successful extensions: 838
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)