Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F08
(399 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75526-1|CAA99772.1| 191|Caenorhabditis elegans Hypothetical pr... 67 4e-12
Z81554-2|CAB04504.1| 259|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical pr... 29 1.6
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 29 1.6
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 29 1.6
U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein. 29 1.6
AF100664-1|AAC68985.1| 580|Caenorhabditis elegans Hypothetical ... 29 1.6
AL032633-1|CAA21594.1| 430|Caenorhabditis elegans Hypothetical ... 28 2.1
U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in bl... 27 3.7
U64859-8|AAC69096.1| 378|Caenorhabditis elegans Prion-like-(q/n... 27 3.7
Z79756-11|CAB02119.2| 614|Caenorhabditis elegans Hypothetical p... 27 5.0
Z49888-4|CAH60776.1| 742|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z49888-3|CAA90063.2| 759|Caenorhabditis elegans Hypothetical pr... 27 5.0
U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z80215-7|CAB02274.1| 674|Caenorhabditis elegans Hypothetical pr... 27 6.5
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ... 27 6.5
Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z77664-2|CAB01217.1| 643|Caenorhabditis elegans Hypothetical pr... 26 8.7
Z73970-5|CAA98248.1| 643|Caenorhabditis elegans Hypothetical pr... 26 8.7
AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic in... 26 8.7
>Z75526-1|CAA99772.1| 191|Caenorhabditis elegans Hypothetical
protein C06H2.1 protein.
Length = 191
Score = 67.3 bits (157), Expect = 4e-12
Identities = 39/102 (38%), Positives = 60/102 (58%), Gaps = 4/102 (3%)
Frame = +3
Query: 39 AKRIAQSSINWAALAERVPAEQKVHLAAFKIRSDSYLRRVLANPPEPPKINWALYKQSVP 218
AKR+A SS+NW+ LAER+ E L K S ++ V P + PKI++A K+++P
Sbjct: 5 AKRVATSSVNWSKLAERLVPEHAAELTRVKGVSGTFQSAVSQLPADLPKIDFAALKKALP 64
Query: 219 I-PGMVDTFQKQYEALNIPY---PADTQTKQIEAQWAQIKTA 332
++D+ QKQYE++ IPY PA+ K+++ QW A
Sbjct: 65 AHSAVLDSLQKQYESVKIPYGEVPAE-YLKEVD-QWVDYNNA 104
>Z81554-2|CAB04504.1| 259|Caenorhabditis elegans Hypothetical
protein F57G4.5 protein.
Length = 259
Score = 28.7 bits (61), Expect = 1.6
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +2
Query: 164 ESTGATEDQLGSLQAIRAHSWHGRHFPETV*SVEYS-LP-CRHPDEANRSSMGTNQDSY- 334
E+ +++ G+L R H G PET EYS +P H ++A SS +++D
Sbjct: 6 ENYSKSQESSGNLSRKRPHEETGNFLPET----EYSTIPLSSHINDAITSSSDSDEDYVS 61
Query: 335 RKLHQGIE**HFFLSN 382
R++ + + H+F SN
Sbjct: 62 RRIRKARQKSHYFNSN 77
>Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical
protein T23G11.3 protein.
Length = 463
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = +3
Query: 198 LYKQSVPIPGMVDTFQKQYEALNIPYPADTQTKQIEAQWAQIKTAIESFIKESNNNIS 371
++ S+ P M D+F A ++ +P T + + T+ SF ++N N+S
Sbjct: 390 VFDYSLLSPSMFDSFSSLQLASDLTFPKYPTTTSFVNSFPGLFTSASSFANQTNTNVS 447
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 28.7 bits (61), Expect = 1.6
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 99 EQKVHLAAFKIRSDSYLRRVLANPPEPPKINWALYKQSVPIPGMVD 236
E K A+ R+D + R ANP PPK+ A K+ P+P D
Sbjct: 170 EDKSQPKAYYQRNDRFQAR--ANPHAPPKLTAAQRKERGPLPRWED 213
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 28.7 bits (61), Expect = 1.6
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 99 EQKVHLAAFKIRSDSYLRRVLANPPEPPKINWALYKQSVPIPGMVD 236
E K A+ R+D + R ANP PPK+ A K+ P+P D
Sbjct: 367 EDKSQPKAYYQRNDRFQAR--ANPHAPPKLTAAQRKERGPLPRWED 410
>U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein.
Length = 463
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = +3
Query: 198 LYKQSVPIPGMVDTFQKQYEALNIPYPADTQTKQIEAQWAQIKTAIESFIKESNNNIS 371
++ S+ P M D+F A ++ +P T + + T+ SF ++N N+S
Sbjct: 390 VFDYSLLSPSMFDSFSSLQLASDLTFPKYPTTTSFVNSFPGLFTSASSFANQTNTNVS 447
>AF100664-1|AAC68985.1| 580|Caenorhabditis elegans Hypothetical
protein M57.2 protein.
Length = 580
Score = 28.7 bits (61), Expect = 1.6
Identities = 17/76 (22%), Positives = 35/76 (46%)
Frame = +3
Query: 54 QSSINWAALAERVPAEQKVHLAAFKIRSDSYLRRVLANPPEPPKINWALYKQSVPIPGMV 233
+++ W A + P + ++ SD+ LR V +NP + I+W + + +
Sbjct: 300 ENTTGWRAFSSTSPNPTSSRV--WQYLSDTPLRVVTSNPTDLENISWTELNEQPYV--NL 355
Query: 234 DTFQKQYEALNIPYPA 281
D + Y+ + +P PA
Sbjct: 356 DRLKTIYDVVEVPQPA 371
>AL032633-1|CAA21594.1| 430|Caenorhabditis elegans Hypothetical
protein Y106G6A.1 protein.
Length = 430
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 143 LPSKGFGESTGATEDQLGSLQAIRAHSWHGRHFPETV*SVEYSLPCRH 286
L +G S E + G A++ S HGRH P+ VEY RH
Sbjct: 162 LIGRGTLGSVYLAEGKKGGTYAVKIISKHGRHLPQEA-DVEYLRMLRH 208
>U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 9 protein.
Length = 378
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 315 PIELRFASSGCRQGKEYSTLHTVSGKCLP-CQEWARIACK 199
P++ + S C Q ++ T+ S +C P CQ+ R C+
Sbjct: 54 PVQQQAPSCSCAQPQQTQTVQVQSTQCAPACQQSCRQQCQ 93
>U64859-8|AAC69096.1| 378|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 57
protein.
Length = 378
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 315 PIELRFASSGCRQGKEYSTLHTVSGKCLP-CQEWARIACK 199
P++ + S C Q ++ T+ S +C P CQ+ R C+
Sbjct: 54 PVQQQAPSCSCAQPQQTQTVQVQSTQCAPACQQSCRQQCQ 93
>Z79756-11|CAB02119.2| 614|Caenorhabditis elegans Hypothetical
protein F53C11.6 protein.
Length = 614
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +3
Query: 12 WPRENRRKMAKRIAQSSINWAALAERVPAEQKVHLAAFKIRSDSYLRRVLANPPEPPK 185
W +E +++ + + + ++ L E V A + L AFK + +Y + P+PP+
Sbjct: 341 WLKEVQQRRIEAMKKEAMR--KLFETVTALHHIRLTAFKQLTQNYDEHLRGKAPDPPR 396
>Z49888-4|CAH60776.1| 742|Caenorhabditis elegans Hypothetical
protein F47A4.3b protein.
Length = 742
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 151 EGFWRIHRSHRRSIGLFTSNPCPFLAW*TLSRNS 252
EGFW+ +R + S G +P + W + S S
Sbjct: 504 EGFWKFNRKQQTSTGELCGSPTSEVKWRSRSTRS 537
>Z49888-3|CAA90063.2| 759|Caenorhabditis elegans Hypothetical
protein F47A4.3a protein.
Length = 759
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 151 EGFWRIHRSHRRSIGLFTSNPCPFLAW*TLSRNS 252
EGFW+ +R + S G +P + W + S S
Sbjct: 521 EGFWKFNRKQQTSTGELCGSPTSEVKWRSRSTRS 554
>U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical protein
F48E3.3 protein.
Length = 1493
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 191 IDLRWLRWIRQNPSKVRVGSNFKCR*VHLLF 99
I+ +W RW+ Q K R+ FK + +LF
Sbjct: 1263 IEYKWPRWLHQQKEKQRIMWGFKILFLDVLF 1293
>Z80215-7|CAB02274.1| 674|Caenorhabditis elegans Hypothetical
protein C36B1.9 protein.
Length = 674
Score = 26.6 bits (56), Expect = 6.5
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = +3
Query: 84 ERVPAEQKVHLAAFKIRSDSYLRRVLANPPEPPKI----NWALYKQSVPIPGMVD-TFQK 248
E+VPA ++ +I + L +VL PP+ +I N+ +PI +V+ T +
Sbjct: 117 EQVPATVPINFQLMQILTTLSLVKVLQTPPQDQEIPKYENFERLGTEIPIADLVNLTMGE 176
Query: 249 QYEALNIPYPA 281
YE L + A
Sbjct: 177 LYEHLKAVFNA 187
>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
protein ZC132.5 protein.
Length = 1277
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -1
Query: 249 VSGKCLPCQEWARIACKEPN*SSVAP--VDSPKPFE 148
+ GKC+ CQ + R K PN + + V +PFE
Sbjct: 869 IIGKCVKCQRYNRAPMKYPNMADMPSFRVRRSRPFE 904
>Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical
protein C25F9.2 protein.
Length = 1469
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = -2
Query: 221 NGHGLLVKSPIDLRWLRWI-RQNPS 150
NG+G S I L++L+WI ++NPS
Sbjct: 906 NGYGTGSNSRIGLKYLQWIEKKNPS 930
>Z77664-2|CAB01217.1| 643|Caenorhabditis elegans Hypothetical
protein C29A12.6 protein.
Length = 643
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 78 LAERVPAEQKVHLAAFKIRSDSYLRRVLANPPE 176
+A+ +P +QK+ R+D Y+ RVL N E
Sbjct: 128 VAKELPEDQKIRKWVVLSRNDRYVPRVLRNNAE 160
>Z73970-5|CAA98248.1| 643|Caenorhabditis elegans Hypothetical
protein C29A12.6 protein.
Length = 643
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 78 LAERVPAEQKVHLAAFKIRSDSYLRRVLANPPE 176
+A+ +P +QK+ R+D Y+ RVL N E
Sbjct: 128 VAKELPEDQKIRKWVVLSRNDRYVPRVLRNNAE 160
>AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic
initiation factor protein3.E protein.
Length = 432
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/50 (22%), Positives = 27/50 (54%)
Frame = +3
Query: 198 LYKQSVPIPGMVDTFQKQYEALNIPYPADTQTKQIEAQWAQIKTAIESFI 347
+++Q + M+D+ + Y IP + + KQI + ++K+ ++S +
Sbjct: 40 MHRQLLTKTNMIDSVIETYNGKPIPAAIEAKKKQIIKERDELKSKVDSVV 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,385,269
Number of Sequences: 27780
Number of extensions: 233021
Number of successful extensions: 730
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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