Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F08
(399 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro... 28 2.0
At2g17340.1 68415.m02003 pantothenate kinase-related contains Pf... 28 2.0
At1g64380.1 68414.m07296 AP2 domain-containing transcription fac... 28 2.6
At4g04670.1 68417.m00683 Met-10+ like family protein / kelch rep... 27 3.5
At1g68930.1 68414.m07889 pentatricopeptide (PPR) repeat-containi... 27 3.5
At5g60620.1 68418.m07608 phospholipid/glycerol acyltransferase f... 27 4.6
At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138... 27 4.6
At3g03260.1 68416.m00322 homeobox-leucine zipper family protein ... 27 4.6
At2g29880.1 68415.m03628 hypothetical protein 27 4.6
At2g02660.1 68415.m00205 hypothetical protein 27 4.6
At1g52380.1 68414.m05911 Ran-binding protein 1 domain-containing... 27 4.6
At1g30500.1 68414.m03728 CCAAT-binding transcription factor (CBF... 27 4.6
At5g58920.1 68418.m07381 expressed protein 27 6.1
At4g18470.1 68417.m02738 negative regulator of systemic acquired... 27 6.1
At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR... 27 6.1
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ... 27 6.1
At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containi... 26 8.0
>At2g43800.1 68415.m05445 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 894
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 338 FDSCLDLCPLSFDLLRLGVGRVRNIQRFILFLESVYHARN 219
F+S ++ SFD L G ++N + F+ LE+V N
Sbjct: 607 FESEIEYLNRSFDTLEAATGELKNTRMFLKLLEAVLKTGN 646
>At2g17340.1 68415.m02003 pantothenate kinase-related contains Pfam
domain, PF01937: Protein of unknown function; supported
by tandem duplication of pantothenate kinase -related
protein (TIGR_Ath1:At2g17320) [Arabidopsis thaliana]
Length = 367
Score = 28.3 bits (60), Expect = 2.0
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +3
Query: 207 QSVPIPGMVDTFQKQYEALNIPY--PADTQTKQI--EAQWAQI-KTAIESFIKESNNNIS 371
+ VP P + + Y A IPY P+D K E W + +I SF K + ++I+
Sbjct: 6 EMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAESDIT 65
>At1g64380.1 68414.m07296 AP2 domain-containing transcription
factor, putative contains Pfam profile: PF00847 AP2
domain
Length = 335
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 165 NPPEPPKINWALYKQSVPIPGMVDTFQKQYEALNIPYP 278
NPP PP++ ++Y + I ++ F Q A++ P+P
Sbjct: 58 NPPPPPQLGSSVYLRQRDI---IEKFHLQNRAISTPHP 92
>At4g04670.1 68417.m00683 Met-10+ like family protein / kelch
repeat-containing protein contains Pfam profiles
PF01344: Kelch motif, PF02475: Met-10+ like-protein
Length = 995
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -3
Query: 190 LIFGGSGGFAKTLRR*ESDLILN 122
++FGG GGF + RR ES L+LN
Sbjct: 286 IVFGGFGGFGRHARRNES-LLLN 307
>At1g68930.1 68414.m07889 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 743
Score = 27.5 bits (58), Expect = 3.5
Identities = 19/80 (23%), Positives = 32/80 (40%)
Frame = +3
Query: 24 NRRKMAKRIAQSSINWAALAERVPAEQKVHLAAFKIRSDSYLRRVLANPPEPPKINWALY 203
N+ + K I + I E VH A ++S +Y RRV P+P +W
Sbjct: 20 NQSRYVKMIHGNIIRALPYPETFLYNNIVHAYAL-MKSSTYARRVFDRIPQPNLFSWNNL 78
Query: 204 KQSVPIPGMVDTFQKQYEAL 263
+ G++ + +E L
Sbjct: 79 LLAYSKAGLISEMESTFEKL 98
>At5g60620.1 68418.m07608 phospholipid/glycerol acyltransferase
family protein contains Pfam PF01553: Acyltransferase
Length = 376
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 117 AAFKIRSDSYLRRVLANPPEPPKINWALY 203
AA I DS+ R +NPPEP NW +Y
Sbjct: 54 AAGAIVDDSFTRCFKSNPPEP--WNWNIY 80
>At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'auxin-independent growth promoter -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 677
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Frame = -2
Query: 104 LFCWHP------FGKGSPVYRALCNPFRHFTAIFP 18
+F W P F + +P+YR L P RH + P
Sbjct: 51 IFSWRPIFDNPRFARHTPLYRRLWGPTRHVETLLP 85
>At3g03260.1 68416.m00322 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
L1 specific homeobox gene ATML1/ovule-specific homeobox
protein A20, GB:CAB36819
Length = 699
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 161 GESTGATEDQLGSLQAIRAHSWHGRHFPETV*SVE-YSLPCRHPDEANRSSM 313
G S+G + G + + H RH P+ + +E Y C HPDE R+ +
Sbjct: 6 GGSSGNEQYTSGDAKQNGKRTCH-RHTPQQIQRLEAYFKECPHPDERQRNQL 56
>At2g29880.1 68415.m03628 hypothetical protein
Length = 308
Score = 27.1 bits (57), Expect = 4.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 277 LPTPRRSKSKLNGHKSRQLSKASSRNRIIT 366
LPT +RSK+ NG +S ++ S ++++
Sbjct: 196 LPTRKRSKTNRNGDRSDSINHGESSEKVLS 225
>At2g02660.1 68415.m00205 hypothetical protein
Length = 421
Score = 27.1 bits (57), Expect = 4.6
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +3
Query: 129 IRSDSYLRRVLANPPEPPKI----NWALYKQSVPIPGMVDTFQKQYEALNIPYPAD 284
I D Y+ R L P + N Y+++ G D KQY+AL+I YP+D
Sbjct: 114 IYGDRYVARPLICNPNTGRYVILPNRYTYRKAYSFFGF-DPIGKQYKALSIAYPSD 168
>At1g52380.1 68414.m05911 Ran-binding protein 1 domain-containing
protein / RanBP1 domain-containing protein weak
similarity to SP|Q09717 Ran-specific GTPase-activating
protein 1 (Ran binding protein 1) (RANBP1) (Spi1-binding
protein) {Schizosaccharomyces pombe}; contains Pfam
profile PF00638: RanBP1 domain
Length = 440
Score = 27.1 bits (57), Expect = 4.6
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = -1
Query: 270 EYSTLHTVSGKCLPCQEWARIACKEPN*SSVAPVDSPKPFEGKSRI*F*MPLSAPSVLLA 91
E T S + L + R+ KEP S APV + PF G + P S P A
Sbjct: 37 ESGTFKKASDEVLASRRIVRVKRKEP---SAAPVAASNPFAGIQLVPTTAPASTPVGTNA 93
Query: 90 PFRQ 79
P +
Sbjct: 94 PLAE 97
>At1g30500.1 68414.m03728 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
Length = 186
Score = 27.1 bits (57), Expect = 4.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 138 DSYLRRVLANPPEPPKINWALYKQSVPIP 224
D Y R + A PP+P + +Q VP+P
Sbjct: 62 DPYYRSIFAPPPQPYTGLMGVQQQGVPLP 90
>At5g58920.1 68418.m07381 expressed protein
Length = 162
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +3
Query: 252 YEALNIPYPADTQT-KQIEAQWAQIKTAI-ESFIKESNNNISSYPTEI 389
YE PYP DT+ + A+ I TAI I ES +Y E+
Sbjct: 83 YERREFPYPGDTEAMEDFVAKGGMIGTAIGPKGIVESEGEADNYQKEM 130
>At4g18470.1 68417.m02738 negative regulator of systemic acquired
resistance (SNI1) identical to negative regulator of
systemic acquired resistance SNI1 [Arabidopsis thaliana]
gi|5758933|gb|AAD50900
Length = 432
Score = 26.6 bits (56), Expect = 6.1
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +2
Query: 86 KGASRTEGALSGI*-----N*IRLLPSKGFGESTGATEDQLGSLQAIRAHS 223
KG + T +SG N + ++ S G +S A ED+L L+A+RA S
Sbjct: 6 KGNNNTSRVMSGYGGSLEANTLAMIDSTGAKDSRDANEDRLQYLEAVRAAS 56
>At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1103
Score = 26.6 bits (56), Expect = 6.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 206 LVKSPIDLRWLRWIRQNPSKVRVGSNFK 123
LV P L+WLRW +N R+ SNFK
Sbjct: 575 LVYLPRKLKWLRW--ENCPLKRLPSNFK 600
>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
gi|12044357|gb|AF312027.1|AF312027
Length = 1399
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 222 PGMVDTFQKQYEALNIPYPADTQTKQIEAQWAQIK 326
P +V+ + ++ ++P+P D ++ E WA IK
Sbjct: 1169 PELVEELKSTMKSSDMPWPGDEGEQRWEQAWAAIK 1203
>At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 554
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 221 NGHGLLVKSPIDLRWLRWIRQNPSKVRVGSNF 126
NGH VK+ +D L+ +R NP +R NF
Sbjct: 263 NGHAQGVKTDVD--GLQALRDNPEAIRTFQNF 292
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,951,972
Number of Sequences: 28952
Number of extensions: 225428
Number of successful extensions: 648
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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