Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F07
(345 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 27 1.1
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 26 1.9
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 25 2.5
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 2.5
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 25 2.5
SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 2.5
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 3.3
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 25 4.4
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 25 4.4
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 25 4.4
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3... 25 4.4
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 24 5.8
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha... 24 5.8
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 24 7.6
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 24 7.6
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 24 7.6
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 24 7.6
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 24 7.6
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 26.6 bits (56), Expect = 1.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 153 KERIHNKSLHLQLPRQSRSDAQEVGLHRRCEIGNEKKRILR 275
K+R+ N S + PR + +V LH+ CE + ++R
Sbjct: 424 KKRLTNSSNYEASPRAKSLNLSQVSLHQACEPEYNRSSLVR 464
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 1.9
Identities = 18/86 (20%), Positives = 32/86 (37%)
Frame = +3
Query: 36 SQHHSGLLTENKDLNRKLPDEVEEDSVLPNEVQDNTFTPKERIHNKSLHLQLPRQSRSDA 215
+ HH K K + NEV+ + PK +H + R+ A
Sbjct: 2 AHHHRSTFKAKKPFKSKHASKSSLKEKYKNEVEPHRSGPKNIVHTST-----KADRRNTA 56
Query: 216 QEVGLHRRCEIGNEKKRILRFNRIPK 293
+++ L++R E+ + N PK
Sbjct: 57 KQIQLNKRTEVAMNNRIFGGKNGAPK 82
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 25.4 bits (53), Expect = 2.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 25 LQSNHNIIAVYSQKIK 72
LQSN NI+ Y+QKI+
Sbjct: 10 LQSNENIVQYYTQKIQ 25
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.4 bits (53), Expect = 2.5
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +3
Query: 63 ENKDLNRKLPDEVEEDSVLPNEVQDNTFTPKERIHNKSLHLQLPRQSRSDAQEV 224
E ++ RKL +++E +Q + T K+RI K L + R+ + +
Sbjct: 606 EEQEEMRKLEEKIESTKYGLETIQTSGKTIKQRIEQKKTRLMILREELQELDAI 659
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 25.4 bits (53), Expect = 2.5
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 21 TSPIESQHHSGLLTENKDLNRKLPDEVEEDSVLPNEVQDNTFTP---KERIHNKSLHLQL 191
+S + S+H S E L R L + ++ LPN + + + N+S++ QL
Sbjct: 94 SSKVPSKHPSPSFPETTSL-RNLQNGSKQKPALPNFNDPHFYNEDVTRSGHPNRSIYTQL 152
Query: 192 PRQSRSDAQ 218
PR S+A+
Sbjct: 153 PRNEFSNAR 161
>SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 135
Score = 25.4 bits (53), Expect = 2.5
Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Frame = +3
Query: 54 LLTENKDLNRKLPD----EVEEDSVLPNEVQDNTFTPKERIHNKSLHLQLPRQSRSDAQE 221
L+ E+K N+ D E E+ + PN+V N + HN+ ++ + R+ + Q
Sbjct: 18 LIHESKKKNKSFVDHGYIEKEKTKLRPNKVFLNNMVRNVQSHNRGINNR--RRDQKRKQL 75
Query: 222 VGLHRRCEIGNEKKRILRFNRIPKQCPVH*IRNTYRE 332
+ + + ++ +R+ R +P+ P + Y+E
Sbjct: 76 ISIKQDNDLNVSSERLSRRIDVPR--PTSKKKRLYKE 110
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.0 bits (52), Expect = 3.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -2
Query: 128 FVRQHAVFFNFVWKFSIKIFIFCE*TAMML*FD 30
F++ HA+ ++F+W S K + E + +L +D
Sbjct: 23 FLQSHALMYSFLWSESAKKSLLNEVFSALLGYD 55
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 24.6 bits (51), Expect = 4.4
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = -2
Query: 329 SISIADLVHRALLWNSI-KAQYSLFFVSDFTSAM*PNFLRITSTLTW*L*MQTFIMNALF 153
++ DL HR L N + + Q ++ + SD + + +S L ++ ++N L
Sbjct: 195 ALGFYDLAHRTLPGNGMHRNQIAVVWASD--ECIVESIYWFSSALCSEDPPKSALLNLL- 251
Query: 152 WCKSIILYFVRQHAVFFNFVWKFSIKIFIFCE 57
K +I ++ R AV F FV I +FI +
Sbjct: 252 --KQLIAFYRRCFAVHFEFVSPMMILLFIISD 281
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 24.6 bits (51), Expect = 4.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 57 LTENKDLNRKLPDEVEEDSVLPN 125
++ENKD N L +EED+ + N
Sbjct: 1 MSENKDKNNILKRHIEEDNNIDN 23
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 24.6 bits (51), Expect = 4.4
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 72 DLNRKLPDEVEEDSVLPNEVQDNTFTPKERI---HNKSLHLQLPRQSRSDAQEVGLHR 236
+++++ E+E+DS P E Q++ R+ +LH + + V LH+
Sbjct: 615 EIHKEAKSEIEKDSSKPTEDQESKLKVYGRVAYSRISNLHKSSKEKGKDSQVRVALHK 672
>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 188
Score = 24.6 bits (51), Expect = 4.4
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 7 GELSSHLQSNHNIIAVYSQKIK-ILIENFQTKLKKTACCRTKYKIILL 147
GEL++H Q NI V K+K + E T L + + +I+ +
Sbjct: 106 GELAAHFQQKWNIPVVRHSKLKPLCTEELYTYLSNNSHVSSASQILFI 153
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.2 bits (50), Expect = 5.8
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +3
Query: 84 KLPDEVEEDSVLPNEVQDNTFTPKERIHNKSLHLQLPRQSRSDAQE 221
KL +E+EE++ E + KE+ +K L+L ++ +E
Sbjct: 571 KLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRRE 616
>SPBC30B4.08 |eri1||double-strand siRNA
ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 24.2 bits (50), Expect = 5.8
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +3
Query: 72 DLNRKLPDEVEEDSVLPNEVQDNTFTPKERIHNKSLHLQLPRQSRSDAQEVGLHRRCEIG 251
++N+K P VEE + E+ +T KE++ + + R QE +++
Sbjct: 16 EMNQKTPSTVEEIRIALQELGLSTNGNKEKL-KRRWKFREKRLEEKRKQE--RYQKFSTS 72
Query: 252 NEKKRILRF 278
NE K LR+
Sbjct: 73 NENKTCLRY 81
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 23.8 bits (49), Expect = 7.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 232 IADVKSETKKSEYCALIEFQSNAL 303
++ ++S+ K+EY L EF+S+ L
Sbjct: 303 LSTIQSKLNKNEYSTLEEFESDIL 326
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 23.8 bits (49), Expect = 7.6
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 157 SAFIIKVCIYNYHVRVEVMRRKLGYIADVKSETKKSEYCALIEFQ 291
SA I + C Y + E+ RR+LG D K + S Y A + Q
Sbjct: 1041 SALIDECCRYIVALSCELERRRLGE-EDTKRALELSYYFASADLQ 1084
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 23.8 bits (49), Expect = 7.6
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +3
Query: 15 LITSPIESQHHSGLLTENKDLNRKLPDEVEEDSVLPNEVQDNTFT 149
LIT I + H GL E L + + + P E Q TFT
Sbjct: 356 LITPVIRNTHALGL-AEISTLAKDYGQRARNNKLKPEEYQGGTFT 399
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 23.8 bits (49), Expect = 7.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 19 SHLQSNHNIIAVYSQKIKILIENFQ 93
SHL+ + +I + S K ILI N +
Sbjct: 68 SHLRDEYGLITLKSNKPHILISNLE 92
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 23.8 bits (49), Expect = 7.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 82 ENFQTKLKKTACCRTKYKIILLHQKSAFII 171
E F +K+ C TK+K++++ K+A II
Sbjct: 9 ELFLSKINSVECA-TKWKVLIVDTKTADII 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,319,895
Number of Sequences: 5004
Number of extensions: 23945
Number of successful extensions: 105
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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