Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F07
(345 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1390 - 33184233-33184478,33184601-33184705,33184783-331848... 32 0.14
11_06_0380 + 22937941-22937984,22939375-22941481 28 1.7
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 27 3.0
07_03_0532 + 19171290-19171394,19173122-19173302,19173761-191742... 27 3.9
03_05_0564 - 25655095-25655106,25656089-25656541,25656886-256569... 27 3.9
03_01_0180 + 1456182-1456359,1456444-1456520,1456570-1456692,145... 27 3.9
01_05_0654 + 23965868-23967718 27 3.9
04_01_0229 - 2897484-2900402 27 5.2
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 27 5.2
10_02_0032 + 4376065-4376743,4376777-4376982 26 6.9
05_04_0126 + 18252594-18256922 26 6.9
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 26 9.1
03_01_0415 + 3191392-3191952 26 9.1
>04_04_1390 -
33184233-33184478,33184601-33184705,33184783-33184890,
33184967-33185101,33185263-33185363,33185495-33185564,
33185642-33185758,33186001-33186138,33186371-33186439,
33186556-33186645,33186758-33186940,33187020-33187052
Length = 464
Score = 31.9 bits (69), Expect = 0.14
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Frame = +1
Query: 28 QSNHNIIAVYSQKIKILIENFQTKLKKTACCRTKYKIILLHQKSAFIIKVCIY--NYHVR 201
+ N+N + Y + K+L E T K+ +++L H + +++VC+ N V+
Sbjct: 115 RKNYNFPS-YKEGWKVLREGKITNFMKSTMLAIDCEMVLCHDGTEALVRVCVVNSNLEVK 173
Query: 202 VEVMRRKLGYIADVKS-------ETKKSEYCALIEFQSN--ALCTKSAILI 327
++ + L +AD ++ + K C+L++ Q + L +K ILI
Sbjct: 174 LDELVNPLKAVADYRTSITGLSKKDLKGVTCSLVDVQKSLKKLLSKGKILI 224
>11_06_0380 + 22937941-22937984,22939375-22941481
Length = 716
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 271 SIRFFSFPISHRRCNPTSCASLR 203
++RF +FPIS + NPT A+L+
Sbjct: 309 TVRFQTFPISKSKSNPTMAAALQ 331
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 27.5 bits (58), Expect = 3.0
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 3 TRRTLITSPI-ESQHHSGLLTENKDLNRKLPDEVEEDSVLPNEVQDNTFTPKERIHNKSL 179
T+ TL+ S E +L+E + N +L ++EE++ +QD KE I ++
Sbjct: 1514 TKDTLLLSERKEKDELKKVLSETEYRNEELVIKIEEENKKVEHLQDTITMLKENIAVQAA 1573
Query: 180 HLQLPRQ 200
+L+ RQ
Sbjct: 1574 NLEAERQ 1580
Score = 26.6 bits (56), Expect = 5.2
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 57 LTENKDLNRKLPDEVEEDSVLPNEVQDNTFTPKERIHNKSLHLQLPRQSRSDAQE 221
L E + NR+L E+ N ++D+ +ERI K L++ RQ + ++
Sbjct: 1310 LVEAESRNRELTKSFEDSDRKINLLEDSVNRLEERIAEKDSLLEIERQENNATKD 1364
>07_03_0532 +
19171290-19171394,19173122-19173302,19173761-19174245,
19174877-19176283,19176413-19176628
Length = 797
Score = 27.1 bits (57), Expect = 3.9
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Frame = +1
Query: 10 ELSSHLQSNHNIIAVYSQKIKILIENFQTKLKKTACCRTKYKIILLHQKSAFIIKVCIYN 189
EL S LQS ++ IA ++K+K+L E + TA ++ + L Q A +K + +
Sbjct: 574 ELRSQLQSANSEIAGLNEKVKMLEEAEEKHKPLTAGLESQLR---LAQAEAMRLKDHVSS 630
Query: 190 YHVRVEVMRR-KLGYIADV-KSETKKSEYCALIEFQ 291
++E + YI + SE +K+++ + E +
Sbjct: 631 LEKKLESQKNLSSAYITALDASEAQKNKFASRFELK 666
>03_05_0564 -
25655095-25655106,25656089-25656541,25656886-25656962,
25657058-25657149,25657447-25657553,25657662-25657747,
25657861-25657977,25658205-25658288,25658400-25658479,
25658958-25659132,25659455-25659521,25660175-25660236,
25660369-25660450,25660890-25661312,25661514-25661610,
25662055-25662095,25662673-25662837
Length = 739
Score = 27.1 bits (57), Expect = 3.9
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = -2
Query: 263 LFFVSDFTSAM*PNFLRITSTLTW*L*MQTFI-----MNALFWCKSIILYFVRQHAVFFN 99
LFF+ +F FL +T L W + T I ++ F+ + +LYF+ H FF+
Sbjct: 499 LFFLFEFYDDQLLAFLVLT--LVWLCELFTMISVRTSISMQFFPRFFLLYFLVFHIYFFS 556
Query: 98 FVWKFSIKIF 69
+ + FS F
Sbjct: 557 YTYGFSYLAF 566
>03_01_0180 +
1456182-1456359,1456444-1456520,1456570-1456692,
1456783-1456896,1457580-1457666,1458040-1458179,
1458253-1458340,1459125-1459198,1461147-1461340,
1461430-1461632,1461955-1462001,1462084-1462336,
1462551-1462568
Length = 531
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 6 RRTLITSPIESQHHSGLLTENKDLN 80
RRT +TSP+ S HH G + + N
Sbjct: 470 RRTPMTSPLSSYHHGGSILRSPASN 494
>01_05_0654 + 23965868-23967718
Length = 616
Score = 27.1 bits (57), Expect = 3.9
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 160 AFIIKVCIYNYHVRVEVMRRKLGYIADVKSETKKSEYCALIEFQSNA 300
A +I C+ +Y R+EV Y E+ K+ +C+LIE S++
Sbjct: 384 ASVIMACVKSY--RMEVGGAAHAYAVRNNLESDKTVFCSLIELYSSS 428
>04_01_0229 - 2897484-2900402
Length = 972
Score = 26.6 bits (56), Expect = 5.2
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 36 SQHHSGLLTENKDLNRKLPDEVEEDSVLPNEVQDNTFTPKERIHNKSLHL 185
S H + T NKDL K D VE + +++ DN+ E I + + HL
Sbjct: 493 SHHVKWIGTSNKDLTNKSSDHVEGNE---SDLNDNSSGHGEGIGSGNKHL 539
>01_06_0276 -
28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/52 (21%), Positives = 26/52 (50%)
Frame = +1
Query: 166 IIKVCIYNYHVRVEVMRRKLGYIADVKSETKKSEYCALIEFQSNALCTKSAI 321
++ V + H+ + R ++G + + + +C L+ F ++A+C AI
Sbjct: 737 LLAVGAVHQHLVANLERTRVGLLVESAEPREVHHFCTLVGFGADAVCPYLAI 788
>10_02_0032 + 4376065-4376743,4376777-4376982
Length = 294
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 177 LHLQLPRQSRSDAQEVGLHRRCEIGN 254
+ +QLP R + QE LH C +GN
Sbjct: 177 ISIQLPTLIRDNIQESLLHSFCSVGN 202
>05_04_0126 + 18252594-18256922
Length = 1442
Score = 26.2 bits (55), Expect = 6.9
Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Frame = +3
Query: 93 DEVEEDSVLPNEVQDNTFTPKERIHNKSLH-----LQLPRQSRSDAQEVGLHRRCEIGNE 257
D E VLP+++ ++ P + + + S+ ++L + E+ +
Sbjct: 1019 DTDNEQKVLPHDLYNHLIQPPKVLESLSIDGPTKIVRLLTMFAKGSNELAKVTLRHTSLK 1078
Query: 258 KKRILRFNRIPKQCPVH*IRNTYRERSV 341
KK ++ +PK C V +N Y E+ +
Sbjct: 1079 KKNLVHITMLPKLCCVRLRQNAYTEKEL 1106
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 187 NYHVRVEVMRRKLGYIADVKSETKKSEYCALIEFQSNALCTKSAI 321
N HV +VM R +GY+ D +S+ C I+ A+ ++ +
Sbjct: 1466 NVHVFEKVMGRSIGYLTDQESQKILLLCCEFIKQHVPAIVMQAVL 1510
>03_01_0415 + 3191392-3191952
Length = 186
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 150 PKERIHNK-SLHLQLPRQSRSDAQEVGLHRR 239
PK +H K S+ L+LP RSD V LH +
Sbjct: 118 PKFSLHQKRSVSLELPPAGRSDDVVVPLHAK 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,041,768
Number of Sequences: 37544
Number of extensions: 139246
Number of successful extensions: 389
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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