Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_F07
(345 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g27590.1 68417.m03963 copper-binding protein-related low simi... 36 0.010
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 30 0.48
At2g03710.2 68415.m00331 MADS-box protein (AGL3) 29 0.63
At3g08960.1 68416.m01047 importin beta-2 subunit family protein ... 29 1.1
At1g75730.1 68414.m08797 expressed protein 29 1.1
At1g68790.1 68414.m07863 expressed protein 29 1.1
At5g45050.2 68418.m05524 disease resistance protein-related simi... 28 1.5
At5g45050.1 68418.m05523 disease resistance protein-related simi... 28 1.5
At5g27110.1 68418.m03236 pentatricopeptide (PPR) repeat-containi... 28 1.9
At1g64320.1 68414.m07289 myosin heavy chain-related similar to m... 28 1.9
At3g13700.1 68416.m01731 RNA-binding protein, putative similar t... 27 2.5
At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein, ... 27 2.5
At5g20830.1 68418.m02474 sucrose synthase / sucrose-UDP glucosyl... 27 3.4
At3g18900.1 68416.m02400 expressed protein contains Pfam profile... 27 3.4
At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,... 27 4.4
At1g16980.1 68414.m02062 alpha, alpha-trehalose-phosphate syntha... 27 4.4
At5g04270.1 68418.m00419 zinc finger (DHHC type) family protein ... 26 5.9
At3g22790.1 68416.m02873 kinase interacting family protein simil... 26 5.9
At2g21680.1 68415.m02579 kelch repeat-containing F-box family pr... 26 5.9
At2g03710.1 68415.m00330 MADS-box protein (AGL3) 26 5.9
At1g50030.1 68414.m05614 target of rapamycin protein (TOR) ident... 26 5.9
At1g34355.1 68414.m04265 forkhead-associated domain-containing p... 26 5.9
At5g26850.1 68418.m03203 expressed protein 26 7.7
At5g17910.1 68418.m02100 expressed protein 26 7.7
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ... 26 7.7
At2g29610.1 68415.m03597 F-box family protein contains Pfam prof... 26 7.7
>At4g27590.1 68417.m03963 copper-binding protein-related low
similarity to copper homeostasis factor gi:3168840 from
Arabidopsis thaliana; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 156
Score = 35.5 bits (78), Expect = 0.010
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +1
Query: 118 CRTKYKIILLHQKSAFIIKVCIYNYHVRVEVMRRKLGYIADVKSETKKSEYCALIEFQSN 297
C K K L H K + +KV YN V V + KL +A VK + K++ + + E ++N
Sbjct: 29 CEKKVKRALSHLKGIYSVKVDYYNQKVTVWGICNKLDVLAMVKKKRKEARFWNVEEEENN 88
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.9 bits (64), Expect = 0.48
Identities = 21/86 (24%), Positives = 39/86 (45%)
Frame = +3
Query: 12 TLITSPIESQHHSGLLTENKDLNRKLPDEVEEDSVLPNEVQDNTFTPKERIHNKSLHLQL 191
TL + +ES + L + + RK P E++E S+ + D E ++ L
Sbjct: 24 TLFSGEVESSGFASLFSADNPFRRKQPQEIKESSIPDEKKGDKRNAENEEEEEET---DL 80
Query: 192 PRQSRSDAQEVGLHRRCEIGNEKKRI 269
P +++ +E L + G+EK+ I
Sbjct: 81 PVKTKKSKKEKKL---TDSGDEKETI 103
>At2g03710.2 68415.m00331 MADS-box protein (AGL3)
Length = 257
Score = 29.5 bits (63), Expect = 0.63
Identities = 21/79 (26%), Positives = 34/79 (43%)
Frame = +3
Query: 54 LLTENKDLNRKLPDEVEEDSVLPNEVQDNTFTPKERIHNKSLHLQLPRQSRSDAQEVGLH 233
LL N+DL RKL D D+ L ++ +++ H + QS QE G
Sbjct: 161 LLETNRDLRRKLED---SDAALTQSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFF 217
Query: 234 RRCEIGNEKKRILRFNRIP 290
+ + GN ++ +N P
Sbjct: 218 KPLQ-GNVALQMSHYNHNP 235
>At3g08960.1 68416.m01047 importin beta-2 subunit family protein low
similarity to Lph2p [Saccharomyces cerevisiae]
GI:1163089; contains Pfam profile PF03810: Importin-beta
N-terminal domain
Length = 754
Score = 28.7 bits (61), Expect = 1.1
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 142 LLHQKSAFIIKVCIYNYHVRVEVMRRKLGYIA--DVKSETKKSEYCALIE-FQSNALCTK 312
++H+K A I+ + V + K I +K +TK++ YCALI+ Q N L K
Sbjct: 453 IIHRKVAMILGHWVSEILVEKWLANGKWLMITTFQIKDDTKRAVYCALIKLLQDNDLAVK 512
Query: 313 SA 318
A
Sbjct: 513 LA 514
>At1g75730.1 68414.m08797 expressed protein
Length = 589
Score = 28.7 bits (61), Expect = 1.1
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Frame = +3
Query: 24 SPIESQHHSGLLTENKDLNRKLPDEVEEDSVLPNEVQDNTFTPKERIHNKSL-------H 182
S ++ G+L + + KL E+ D++ ++++ K ++ K+L H
Sbjct: 25 SGFSTKSKKGMLKKLGFADEKLKQEMSYDTLPSPDLENEVSKKKSKLPKKNLKDTNGVDH 84
Query: 183 LQLPRQSRSDAQEVGLHRRCEIGNEKKRILRF 278
+PR+ RS ++ L ++ + KR+ RF
Sbjct: 85 ASVPRKLRSAMKKRNLESVSKLSSVSKRLNRF 116
>At1g68790.1 68414.m07863 expressed protein
Length = 1085
Score = 28.7 bits (61), Expect = 1.1
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Frame = +3
Query: 57 LTENKDLNRKLPDEVEE--------DSVLPNEVQDNTFTPKERIHNKSLHLQLPRQ--SR 206
L E+K+ RKL DE+EE +S + E + T +ER+ L +L +Q
Sbjct: 452 LLEDKECLRKLKDEIEEIGTETTKQESRIREEHESLRITKEERVEFLRLQSELKQQIDKV 511
Query: 207 SDAQEVGLHRRCEIGNEKKR 266
+E+ L R E+ +K+R
Sbjct: 512 KQEEELLLKEREELKQDKER 531
>At5g45050.2 68418.m05524 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1344
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +3
Query: 15 LITSPIESQHHSGLLTENKDL----NRKLPDEVEEDSVLPNEVQDNTFTPKERIHNKSLH 182
L +SP S ++ ++ + +D+ N + +VEED+ +P ++TF +++ S
Sbjct: 1252 LPSSPA-SPPYAAMVVKEEDMEQWDNMEFDVDVEEDTFIPELFPEDTFADMDKLEENSQT 1310
Query: 183 LQLPRQSRSDAQE 221
+ L R+S E
Sbjct: 1311 MFLSRRSSGGNME 1323
>At5g45050.1 68418.m05523 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1372
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +3
Query: 15 LITSPIESQHHSGLLTENKDL----NRKLPDEVEEDSVLPNEVQDNTFTPKERIHNKSLH 182
L +SP S ++ ++ + +D+ N + +VEED+ +P ++TF +++ S
Sbjct: 1280 LPSSPA-SPPYAAMVVKEEDMEQWDNMEFDVDVEEDTFIPELFPEDTFADMDKLEENSQT 1338
Query: 183 LQLPRQSRSDAQE 221
+ L R+S E
Sbjct: 1339 MFLSRRSSGGNME 1351
>At5g27110.1 68418.m03236 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 691
Score = 27.9 bits (59), Expect = 1.9
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = +3
Query: 90 PDEVEEDSVLPNEVQDNTFTPKERIHNKSLHLQLPRQSRSDAQEVGLHRRCEIGNEKKRI 269
PD V SVLP Q ++IH +L + + ++ +C GNEK+
Sbjct: 408 PDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKC--GNEKEAF 465
Query: 270 LRFNRIPKQ 296
FN IPK+
Sbjct: 466 RIFNSIPKK 474
>At1g64320.1 68414.m07289 myosin heavy chain-related similar to
myosin heavy chain (GI:4249703) [Rana catesbeiana];
similar to smooth muscle myosin heavy chain SM2
(GI:2352945) [Homo sapiens]
Length = 476
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +3
Query: 57 LTENKDLNRKLPDEVEEDSVLPNEVQDNTFTPKERIHNK-----SLHLQLPRQSRSDAQE 221
+TE K + L +E EE+ +E D + +H + SLH+++ +S + ++
Sbjct: 126 VTETKMQLKSLKEETEEERNRLSEEIDQLKGENQMLHRRISELDSLHMEMKTKSAHEMED 185
Query: 222 VGLHRRCEIGNEKKRI 269
E+ ++KK +
Sbjct: 186 ASKKLDTEVSDQKKLV 201
>At3g13700.1 68416.m01731 RNA-binding protein, putative similar to
mec-8 [Caenorhabditis elegans] GI:1370048; contains Pfam
profile:PF00076 rrm:RNA recognition motif
Length = 296
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +3
Query: 66 NKDLNRKLPDEVEEDSVLPNEVQD--NTFTPKERIHNKS 176
NK++++ D+ +E P+EVQ+ N+ +PKE KS
Sbjct: 154 NKEISKSQDDQSDEGDSDPDEVQEPGNSDSPKENDTTKS 192
>At2g46970.1 68415.m05867 basic helix-loop-helix (bHLH) protein,
putative similar to PIF3 like basic Helix Loop Helix
protein (PIL1) [Arabidopsis thaliana] GI:22535492;
contains Myc-type, 'helix-loop-helix' dimerization
domain signature, PROSITE:PS00038
Length = 416
Score = 27.5 bits (58), Expect = 2.5
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 75 LNRKLPD-EVEEDSVLPNEVQDNTFTPKERIHNKSLHLQLPRQSRSDAQEVGLHRRCEIG 251
L RK D E EE + L N D + K ++H ++ R+ ++ ++ +R +
Sbjct: 186 LKRKYGDIEEEESTYLSNNSDDESDDAKTQVHARTRKPVTKRKRSTEVHKLYERKRRDEF 245
Query: 252 NEKKRILR 275
N+K R L+
Sbjct: 246 NKKMRALQ 253
>At5g20830.1 68418.m02474 sucrose synthase / sucrose-UDP
glucosyltransferase (SUS1) identical to SP|P49040
Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP
glucosyltransferase) {Arabidopsis thaliana}
Length = 808
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 148 HQKSAFIIKVCIYNYHVRVEVMRRKLGYIADVKSETKKSEYCALIE 285
HQ ++ I N + +R+ Y+A++KSET E+ A E
Sbjct: 189 HQGKNLMLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFE 234
>At3g18900.1 68416.m02400 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547; contains
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 815
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 70 KILIENFQTKLKKTACCRTKYKIILLHQKSAF 165
++L+ N T CC YKI+ HQ+S +
Sbjct: 573 RVLVWNPLTGEPDNNCCNKSYKILSSHQRSEY 604
>At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,
putative similar to SP|Q03460 Glutamate synthase [NADH],
chloroplast precursor (EC 1.4.1.14) (NADH- GOGAT)
{Medicago sativa}
Length = 2208
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/52 (19%), Positives = 27/52 (51%)
Frame = +1
Query: 166 IIKVCIYNYHVRVEVMRRKLGYIADVKSETKKSEYCALIEFQSNALCTKSAI 321
++ V ++H+ + R ++G + + + +C L+ F ++A+C A+
Sbjct: 766 LMAVGAVHHHLVKTLARTQVGLVVESAEPREVHHFCTLVGFGADAICPYLAV 817
>At1g16980.1 68414.m02062 alpha, alpha-trehalose-phosphate synthase,
UDP-forming, putative / trehalose-6-phosphate synthase,
putative / UDP-glucose-glucosephosphate
glucosyltransferase, putative similar to
trehalose-6-phosphate synthase SL-TPS/P [Selaginella
lepidophylla] GI:4100325; contains Pfam profiles
PF00982: Glycosyltransferase family 20, PF02358:
Trehalose-phosphatase
Length = 821
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 237 GDVTQLPAHHFDSDVVVVNADFYYECAL 154
G V+ LP HH D V DF Y CA+
Sbjct: 351 GSVSSLPIHHLDCSV-----DFNYLCAI 373
>At5g04270.1 68418.m00419 zinc finger (DHHC type) family protein low
similarity to Golgi-specific DHHC zinc figer protein
[Mus musculus] GI:21728103; contains Pfam profile
PF01529: DHHC zinc finger domain
Length = 284
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 184 YNYHVRVEVMRRKLGYIADVKSETKKSEYC 273
Y V V RK G+I D +ET+K + C
Sbjct: 81 YKRRFDVGVKLRKNGFIVDAVTETRKCDKC 110
>At3g22790.1 68416.m02873 kinase interacting family protein similar to
kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1694
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/70 (21%), Positives = 29/70 (41%)
Frame = +3
Query: 60 TENKDLNRKLPDEVEEDSVLPNEVQDNTFTPKERIHNKSLHLQLPRQSRSDAQEVGLHRR 239
+ ++ +RKL +E+E + E++ N SL +P +D G RR
Sbjct: 1399 SSHRSKDRKLFEEIELEDQFSGEIRQPRSPAMTESKNGSLMKDIPLDQVADTTSYGRSRR 1458
Query: 240 CEIGNEKKRI 269
G+ + +
Sbjct: 1459 TSRGSSDQML 1468
>At2g21680.1 68415.m02579 kelch repeat-containing F-box family
protein low similarity to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 414
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 63 ENKDLNRKLPDEVEEDSVLPNEVQDNTFTPKERIHNKSLHL 185
+ +D N+KL ++V+ +P E+ F R H+ SL L
Sbjct: 24 KEEDRNKKLKEKVQVSLPIPEELILRCFLLVRRCHHPSLSL 64
>At2g03710.1 68415.m00330 MADS-box protein (AGL3)
Length = 258
Score = 26.2 bits (55), Expect = 5.9
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +3
Query: 54 LLTENKDLNRKLPDEVEEDSVLPNEVQDNTFTPKERIHNKSLHLQLPRQSRSDAQEVGLH 233
LL N+DL RKL D D+ L ++ +++ H + QS QE G
Sbjct: 161 LLETNRDLRRKLED---SDAALTQSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFF 217
Query: 234 R 236
+
Sbjct: 218 K 218
>At1g50030.1 68414.m05614 target of rapamycin protein (TOR) identical
to pTOR [Arabidopsis thaliana] GI:12002902; contains Pfam
profiles PF00454 Phosphatidylinositol 3- and 4-kinase,
PF02259 FAT domain, PF02260 FATC domain
Length = 2481
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 60 TENKDLNRKLPDEVEEDSVLPNEV 131
T + L+R+LP EV D V+ NE+
Sbjct: 1155 TATQQLSRRLPVEVIRDPVIENEI 1178
>At1g34355.1 68414.m04265 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 1477
Score = 26.2 bits (55), Expect = 5.9
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 9 RTLITSPIESQHHSGLLTENKDL-NRKLPDEVEEDSVLPNEVQDNTFTPKERI 164
R L+ S E Q + TE ++L N+K E + S + V D TPK+R+
Sbjct: 809 RGLVGSDSEFQSEVAMKTECENLLNQKRNGETKVSSRQASPVSDCLSTPKDRL 861
>At5g26850.1 68418.m03203 expressed protein
Length = 919
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 54 LLTENKDLNRKLPDEVEEDSVLPNEVQDNTFTPKE 158
L TEN+ +N + +EE S L V+D +E
Sbjct: 855 LATENRQMNGLYGNSLEESSALEKVVEDGNIYGRE 889
>At5g17910.1 68418.m02100 expressed protein
Length = 1342
Score = 25.8 bits (54), Expect = 7.7
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Frame = +3
Query: 72 DLNRKLPDEVEEDSVLPNEVQDNTFTPKERIHNKSLHLQLPRQSRSDAQEVGLHRRCEIG 251
DL K +E+EE+ EV + P+E IH+ S ++ + EVG +
Sbjct: 774 DLPEKNGEEIEENEEKEREVYSESIGPEE-IHSTS------NETETRTSEVG-ENSMHVT 825
Query: 252 NEKKRILRFNRIP-KQCP--VH*IRNTYRERSV 341
E ++R + P ++ P VH I T +SV
Sbjct: 826 GEASLVMREHSTPLEESPDVVHDIAETSVNKSV 858
>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1230
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/60 (23%), Positives = 25/60 (41%)
Frame = +3
Query: 51 GLLTENKDLNRKLPDEVEEDSVLPNEVQDNTFTPKERIHNKSLHLQLPRQSRSDAQEVGL 230
G T N + +P ++EEDSV V+D + + + + L + D + L
Sbjct: 340 GAKTTNGETTHAVPSQIEEDSVHDPMVRDRRRKMRRKTDGRVQNENLDAYAAIDVHNINL 399
>At2g29610.1 68415.m03597 F-box family protein contains Pfam profile
PF00646: F-box domain
Length = 328
Score = 25.8 bits (54), Expect = 7.7
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Frame = +3
Query: 72 DLNRKLPDEVEEDSVLPNEVQD----NTFTPKERIHNKS-----LHLQLPRQSRSDAQEV 224
D N +E EE LP ++ N PKE+IHN++ +H + P++ + + +
Sbjct: 15 DPNNNPQEEDEEVKNLPIHQEEQKIHNENLPKEKIHNENPQEQKIHNENPQEQKIHNENL 74
Query: 225 GLHRRCE-IGNE 257
+H+ E I NE
Sbjct: 75 PVHQEEEKIHNE 86
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,758,202
Number of Sequences: 28952
Number of extensions: 120471
Number of successful extensions: 454
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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