BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_F06 (236 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|... 37 4e-04 SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 27 0.44 SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 26 0.76 SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 26 0.76 SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 25 1.3 SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe... 25 1.3 SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c... 25 1.3 SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 24 3.1 SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 23 4.1 SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 23 5.4 SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 23 5.4 SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 23 7.1 SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 23 7.1 SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 23 7.1 SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 23 7.1 SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 22 9.4 SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 22 9.4 >SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|Schizosaccharomyces pombe|chr 1|||Manual Length = 336 Score = 36.7 bits (81), Expect = 4e-04 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = +2 Query: 35 RESLKNKFPEYDILTLPSQYIFDNLMHIRKNLDKLDRVN 151 RE +K K P YDI T+ Y++ +H KN+D L+ N Sbjct: 178 REYVKEKKPSYDICTINPPYVYGPPIHPMKNMDSLNTSN 216 >SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 808 Score = 26.6 bits (56), Expect = 0.44 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = +2 Query: 2 SKVRAIYNMGPRESLKNKFPEYDILTLPSQYIFDNLMHIRK 124 +K++ I + ESLK+ P Y LTLP+ + L I+K Sbjct: 237 TKMKVISDKEGYESLKDLPPAYSTLTLPNLPSEEGLQFIQK 277 >SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|Schizosaccharomyces pombe|chr 1|||Manual Length = 511 Score = 25.8 bits (54), Expect = 0.76 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = +2 Query: 56 FPEYDILTLPSQYIFDNLMHIRKNLDKLDRVNDRHNFNIRSKDKLAVPRFR 208 FP ++L L + I + KNL L ++ +N N+ S D AV F+ Sbjct: 216 FPSLEVLYLEANEIILSKATSFKNLQFLQTLSLANNLNLYSADGYAVDVFQ 266 >SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schizosaccharomyces pombe|chr 1|||Manual Length = 624 Score = 25.8 bits (54), Expect = 0.76 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = +2 Query: 38 ESLKNKFPE-YDILTLPSQYIFDNLMHIRKN 127 E LKN YD+L LP+ Y+ ++++ I N Sbjct: 499 EVLKNPLMNIYDLLELPNLYVVEDVVRIEVN 529 >SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizosaccharomyces pombe|chr 2|||Manual Length = 561 Score = 25.0 bits (52), Expect = 1.3 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = -1 Query: 149 SLDRACLNFYEYA 111 S+++ C NFYEYA Sbjct: 484 SMEKECANFYEYA 496 >SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 563 Score = 25.0 bits (52), Expect = 1.3 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = -1 Query: 158 DDHSLDRACLNFYEYALSYRRCIGRVKLRYHILGTCSLEI 39 DD S + L+ ++ + YR IG + L ++G CS I Sbjct: 82 DDASKNNTFLSTFDPGVEYRVSIGLMLLLSALIGFCSESI 121 >SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 411 Score = 25.0 bits (52), Expect = 1.3 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +2 Query: 38 ESLKNKFPEYDILTLPSQYIFDNLMHIRKNLDKLDRVN 151 E L+ FP+ + T S Y FD H + ++ DR+N Sbjct: 246 EYLRESFPQTPMGTEASGYSFDRTPH-KSDIQASDRLN 282 >SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual Length = 1339 Score = 23.8 bits (49), Expect = 3.1 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = +2 Query: 62 EYDILTLPSQYIFDNLM 112 EYD T+PSQ+ F N++ Sbjct: 1204 EYDFDTIPSQFNFVNIV 1220 >SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|Schizosaccharomyces pombe|chr 1|||Manual Length = 1199 Score = 23.4 bits (48), Expect = 4.1 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = -1 Query: 152 HSLDRACLNFYEYALSYRRCIGRVKLRYHIL 60 HS + L YEY + R + R+K Y I+ Sbjct: 513 HSNFQVLLTTYEYIIKDRPLLSRIKWIYMII 543 >SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 663 Score = 23.0 bits (47), Expect = 5.4 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +2 Query: 122 KNLDKLDRVNDRHNFNIRSKDKLAVPR 202 K KLD+V + FN+++ D L P+ Sbjct: 523 KKNGKLDKVKQQCRFNLKNGDILFCPQ 549 >SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 554 Score = 23.0 bits (47), Expect = 5.4 Identities = 9/24 (37%), Positives = 13/24 (54%) Frame = +2 Query: 116 IRKNLDKLDRVNDRHNFNIRSKDK 187 + NL + +ND+ F I KDK Sbjct: 476 VNSNLTANNSLNDKPGFTIEQKDK 499 >SPBC1773.03c |||aminotransferase class-III, unknown specificty|Schizosaccharomyces pombe|chr 2|||Manual Length = 459 Score = 22.6 bits (46), Expect = 7.1 Identities = 8/24 (33%), Positives = 15/24 (62%) Frame = -3 Query: 156 RSFTRSSLSKFLRICIKLSKMYWE 85 R++ +S S+ + C+KL YW+ Sbjct: 107 RAYFANSGSEAVETCLKLILQYWQ 130 >SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 682 Score = 22.6 bits (46), Expect = 7.1 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = +2 Query: 65 YDILTLPSQYIFDNLMHIRKNLDKLDR 145 YD L L SQY N RK + K D+ Sbjct: 181 YDYLKLVSQYQHLNQQAFRKIVKKYDK 207 >SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 646 Score = 22.6 bits (46), Expect = 7.1 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +2 Query: 134 KLDRVNDRHNFNIRSKDKLAVPRFR 208 KL V + HNF + DKL V R R Sbjct: 80 KLTGVINEHNFRNQFLDKLEVERRR 104 >SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 879 Score = 22.6 bits (46), Expect = 7.1 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = -2 Query: 205 KAWDGQLVFTSNIK 164 +A DGQL+F S IK Sbjct: 625 RAHDGQLIFDSRIK 638 >SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 3071 Score = 22.2 bits (45), Expect = 9.4 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -1 Query: 134 CLNFYEYALSYRRCIGRVKLRYHILGTCSLEI 39 CL +Y +R C+ + YHIL CSL+I Sbjct: 746 CLIGPDYETGWR-CLPK-GCDYHILKECSLDI 775 >SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|Schizosaccharomyces pombe|chr 3|||Manual Length = 638 Score = 22.2 bits (45), Expect = 9.4 Identities = 13/39 (33%), Positives = 18/39 (46%) Frame = -1 Query: 158 DDHSLDRACLNFYEYALSYRRCIGRVKLRYHILGTCSLE 42 DD L AC N Y Y LS G + +++ +LE Sbjct: 350 DDDLLAVACKNGYGYLLSTDNSTGEILTSANLIYPEALE 388 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 869,779 Number of Sequences: 5004 Number of extensions: 14634 Number of successful extensions: 40 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 40 length of database: 2,362,478 effective HSP length: 58 effective length of database: 2,072,246 effective search space used: 41444920 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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