Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F06
         (236 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    37   4e-04
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    27   0.44 
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    26   0.76 
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    26   0.76 
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    25   1.3  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    25   1.3  
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    25   1.3  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    24   3.1  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    23   4.1  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    23   5.4  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    23   5.4  
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    23   7.1  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    23   7.1  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    23   7.1  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    23   7.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    22   9.4  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    22   9.4  

>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 36.7 bits (81), Expect = 4e-04
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 35  RESLKNKFPEYDILTLPSQYIFDNLMHIRKNLDKLDRVN 151
           RE +K K P YDI T+   Y++   +H  KN+D L+  N
Sbjct: 178 REYVKEKKPSYDICTINPPYVYGPPIHPMKNMDSLNTSN 216


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 2   SKVRAIYNMGPRESLKNKFPEYDILTLPSQYIFDNLMHIRK 124
           +K++ I +    ESLK+  P Y  LTLP+    + L  I+K
Sbjct: 237 TKMKVISDKEGYESLKDLPPAYSTLTLPNLPSEEGLQFIQK 277


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 56  FPEYDILTLPSQYIFDNLMHIRKNLDKLDRVNDRHNFNIRSKDKLAVPRFR 208
           FP  ++L L +  I  +     KNL  L  ++  +N N+ S D  AV  F+
Sbjct: 216 FPSLEVLYLEANEIILSKATSFKNLQFLQTLSLANNLNLYSADGYAVDVFQ 266


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 38  ESLKNKFPE-YDILTLPSQYIFDNLMHIRKN 127
           E LKN     YD+L LP+ Y+ ++++ I  N
Sbjct: 499 EVLKNPLMNIYDLLELPNLYVVEDVVRIEVN 529


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 149 SLDRACLNFYEYA 111
           S+++ C NFYEYA
Sbjct: 484 SMEKECANFYEYA 496


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 158 DDHSLDRACLNFYEYALSYRRCIGRVKLRYHILGTCSLEI 39
           DD S +   L+ ++  + YR  IG + L   ++G CS  I
Sbjct: 82  DDASKNNTFLSTFDPGVEYRVSIGLMLLLSALIGFCSESI 121


>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 38  ESLKNKFPEYDILTLPSQYIFDNLMHIRKNLDKLDRVN 151
           E L+  FP+  + T  S Y FD   H + ++   DR+N
Sbjct: 246 EYLRESFPQTPMGTEASGYSFDRTPH-KSDIQASDRLN 282


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 62   EYDILTLPSQYIFDNLM 112
            EYD  T+PSQ+ F N++
Sbjct: 1204 EYDFDTIPSQFNFVNIV 1220


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 152 HSLDRACLNFYEYALSYRRCIGRVKLRYHIL 60
           HS  +  L  YEY +  R  + R+K  Y I+
Sbjct: 513 HSNFQVLLTTYEYIIKDRPLLSRIKWIYMII 543


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 122 KNLDKLDRVNDRHNFNIRSKDKLAVPR 202
           K   KLD+V  +  FN+++ D L  P+
Sbjct: 523 KKNGKLDKVKQQCRFNLKNGDILFCPQ 549


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 116 IRKNLDKLDRVNDRHNFNIRSKDK 187
           +  NL   + +ND+  F I  KDK
Sbjct: 476 VNSNLTANNSLNDKPGFTIEQKDK 499


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 156 RSFTRSSLSKFLRICIKLSKMYWE 85
           R++  +S S+ +  C+KL   YW+
Sbjct: 107 RAYFANSGSEAVETCLKLILQYWQ 130


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 65  YDILTLPSQYIFDNLMHIRKNLDKLDR 145
           YD L L SQY   N    RK + K D+
Sbjct: 181 YDYLKLVSQYQHLNQQAFRKIVKKYDK 207


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 134 KLDRVNDRHNFNIRSKDKLAVPRFR 208
           KL  V + HNF  +  DKL V R R
Sbjct: 80  KLTGVINEHNFRNQFLDKLEVERRR 104


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 205 KAWDGQLVFTSNIK 164
           +A DGQL+F S IK
Sbjct: 625 RAHDGQLIFDSRIK 638


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 134 CLNFYEYALSYRRCIGRVKLRYHILGTCSLEI 39
           CL   +Y   +R C+ +    YHIL  CSL+I
Sbjct: 746 CLIGPDYETGWR-CLPK-GCDYHILKECSLDI 775


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 158 DDHSLDRACLNFYEYALSYRRCIGRVKLRYHILGTCSLE 42
           DD  L  AC N Y Y LS     G +    +++   +LE
Sbjct: 350 DDDLLAVACKNGYGYLLSTDNSTGEILTSANLIYPEALE 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 869,779
Number of Sequences: 5004
Number of extensions: 14634
Number of successful extensions: 40
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)