Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_F06
         (236 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0122 - 11007740-11007872,11007885-11008045                       26   4.9  
10_08_0066 + 14610220-14610798,14610928-14611287                       25   6.5  
11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644           25   8.6  
06_03_0675 - 23428948-23431389                                         25   8.6  

>10_06_0122 - 11007740-11007872,11007885-11008045
          Length = 97

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 107 LMHIRKNLDKLDRVNDRHNFNIRSKDKLAVPRF 205
           L+++  N+D  D V+D H FN R   +LA P F
Sbjct: 14  LLNLIGNMDDTD-VSDAHVFNFRFLFRLARPPF 45


>10_08_0066 + 14610220-14610798,14610928-14611287
          Length = 312

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 152 HSLDRACLNFYEYALSYRRCIGRVKLRYHILGTCSLEIREV 30
           H+L  ACL F   + S +  +     RY ++G+C   I+++
Sbjct: 266 HTLKEACLEFLRSSRSLKAVVETDGFRY-LIGSCPGLIKDI 305


>11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644
          Length = 581

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 68  DILTLPSQYIFDNLMHIRKNLDKLDRVNDRHNFNIRSKDKLAVPRFRLSKSNKSFI 235
           D + + SQ   D+  H+R  L KL         NIR+   L +P ++  +    FI
Sbjct: 173 DDILIYSQSEEDHQHHLRLVLGKLREHQFESRQNIRNPPPLKIPEWKWEEIGMDFI 228


>06_03_0675 - 23428948-23431389
          Length = 813

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 90  WEGKVKISYSGNLFFRDSRGPILY 19
           W  K+K++  GN+  +D  G I++
Sbjct: 87  WGSKIKLNIDGNMVLQDYGGQIVW 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,149,310
Number of Sequences: 37544
Number of extensions: 77887
Number of successful extensions: 182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 14,793,348
effective HSP length: 57
effective length of database: 12,653,340
effective search space used: 265720140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)